8qbt.1 | SWISS-MODEL Template Library

SMTL ID : 8qbt.1

E. coli ApdP-stalled ribosomal complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.20 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x LYS- CYS- ILE- ARG- ALA- PRO: ApdP nascent chain(Non-functional Binders)

248 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

127 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)

1 x PRO: PROLINE(Non-functional Binders)

1 x ZN: ZINC ION(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Morici, M. et al., RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nat Commun (2024)

Release Date

2024-03-20

Peptides

Large ribosomal subunit protein uL2: C
50S ribosomal protein L3: D
Large ribosomal subunit protein uL4: E
Large ribosomal subunit protein uL5: F
Large ribosomal subunit protein uL6: G
Large ribosomal subunit protein bL9: H
Large ribosomal subunit protein uL13: I
Large ribosomal subunit protein uL14: J
50S ribosomal protein L15: K
50S ribosomal protein L16: L
Large ribosomal subunit protein bL17: M
Large ribosomal subunit protein uL18: N
Large ribosomal subunit protein bL19: O
Large ribosomal subunit protein bL20: P
Large ribosomal subunit protein bL21: Q
Large ribosomal subunit protein uL22: R
Large ribosomal subunit protein uL23: S
Large ribosomal subunit protein uL24: T
50S ribosomal protein L25: U
Large ribosomal subunit protein bL27: V
Large ribosomal subunit protein bL28: W
Large ribosomal subunit protein uL29: X
Large ribosomal subunit protein uL30: Y
Large ribosomal subunit protein bL32: Z
Large ribosomal subunit protein bL33: 0
Large ribosomal subunit protein bL34: 1
Large ribosomal subunit protein bL35: 2
30S ribosomal protein S2: 4
Small ribosomal subunit protein uS5: 5
30S ribosomal protein S6, fully modified isoform: 6
30S ribosomal protein S7: 7
Small ribosomal subunit protein uS8: 8
Small ribosomal subunit protein uS9: 9
30S ribosomal protein S11: a
30S ribosomal protein S12: b
Small ribosomal subunit protein uS13: c
Small ribosomal subunit protein uS14: d
Small ribosomal subunit protein uS15: e
Small ribosomal subunit protein uS17: f
Small ribosomal subunit protein bS18: g
Small ribosomal subunit protein uS19: h
30S ribosomal protein S20: i
Small ribosomal subunit protein bS21: j
Large ribosomal subunit protein bL36A: o

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

D
D

E
E

F
F

G
G

H
H

I
J

J
K

K
L

L
M

M
N

N
O

O
P

P
Q

Q
R

R
S

S
T

T
U

U
V

V
W

W
X

X
Y

Y
Z

Z
a

0
b

1
c

2
d

4
j

5
m

6
n

7
o

8
p

9
q

a
s

b
t

c
u

d
v

e
w

f
y

g
z

h
1

i
2

j
3

o
e

Large ribosomal subunit protein uL2

50S ribosomal protein L3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein bL9

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL14

50S ribosomal protein L15

50S ribosomal protein L16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

50S ribosomal protein L25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL33

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

30S ribosomal protein S2

Small ribosomal subunit protein uS5

30S ribosomal protein S6, fully modified isoform

30S ribosomal protein S7

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS9

30S ribosomal protein S11

30S ribosomal protein S12

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS15

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

Small ribosomal subunit protein uS19

30S ribosomal protein S20

Small ribosomal subunit protein bS21

Large ribosomal subunit protein bL36A

Related Entries With Identical Sequence

1b75.1 | 1d6k.1 | 1dfu.1 | 2j28.1 | 3bbx.1 | 3j45.1 | 3j46.1 | 3j5l.1 | 3j7z.1 | 3j8g.1 | 3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 487d.1 | 4adv.1 | 4csu.1 | 4peb.1 | 4pec.1 | 4tom.1 | 4too.1 | 4tov.1 | 4tox.1 | 4tp1.1 | 4tp3.1 more...