SMTL ID : 8pva.1

Structure of bacterial ribosome determined by cryoEM at 100 keV

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x C- A: E-site tRNA(Non-covalent)

C-A.1: 9 residues within 4Å: Chain V: C.2394, C.2395, G.2421, C.2422, A.2432 Chain h: H.20, A.21, L.22 Chain n: H.31 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain o: C.11, C.14, C.27, H.33 4 PLIP interactions: 4 interactions with chain o Metal complexes: o:C.11, o:C.14, o:C.27, o:H.33 ZN.3: 4 residues within 4Å: Chain p: C.16, C.18, C.37, C.40 4 PLIP interactions: 4 interactions with chain p Metal complexes: p:C.16, p:C.18, p:C.37, p:C.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMullan, G. et al., Structure determination by cryoEM at 100 keV. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-11-29

Peptides

Small ribosomal subunit protein uS2: B
Small ribosomal subunit protein uS3: C
Small ribosomal subunit protein uS4: D
Small ribosomal subunit protein uS5: E
Small ribosomal subunit protein bS6, fully modified isoform: F
Small ribosomal subunit protein uS7: G
Small ribosomal subunit protein uS8: H
Small ribosomal subunit protein uS9: I
Small ribosomal subunit protein uS10: J
Small ribosomal subunit protein uS11: K
Small ribosomal subunit protein uS12: L
Small ribosomal subunit protein uS13: M
Small ribosomal subunit protein uS14: N
Small ribosomal subunit protein uS15: O
Small ribosomal subunit protein bS16: P
Small ribosomal subunit protein uS17: Q
Small ribosomal subunit protein bS18: R
Small ribosomal subunit protein uS19: S
Small ribosomal subunit protein bS20: T
Small ribosomal subunit protein bS21: U
Large ribosomal subunit protein uL2: X
Large ribosomal subunit protein uL3: Y
Large ribosomal subunit protein uL4: Z
Large ribosomal subunit protein uL5: 0
Large ribosomal subunit protein uL6: 1
Large ribosomal subunit protein bL9: 2
Large ribosomal subunit protein uL13: 3
50S ribosomal protein L14: 4
50S ribosomal protein L15: 5
Large ribosomal subunit protein uL16: 6
50S ribosomal protein L17: 7
50S ribosomal protein L18: 8
50S ribosomal protein L19: 9
50S ribosomal protein L20: a
50S ribosomal protein L21: b
50S ribosomal protein L22: c
50S ribosomal protein L23: d
50S ribosomal protein L24: e
50S ribosomal protein L25: f
50S ribosomal protein L27: g
50S ribosomal protein L28: h
50S ribosomal protein L29: i
50S ribosomal protein L30: j
50S ribosomal protein L32: k
50S ribosomal protein L33: l
50S ribosomal protein L34: m
50S ribosomal protein L35: n
50S ribosomal protein L36: o
Large ribosomal subunit protein bL31A: p

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

X
c

Y
d

Z
e

0
f

1
g

2
h

3
i

4
j

5
k

6
l

7
m

8
n

9
o

a
p

b
q

c
r

d
s

e
t

f
u

g
v

h
w

i
x

j
y

k
z

l
0

m
1

n
2

o
3

p
4

Small ribosomal subunit protein uS2

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

Small ribosomal subunit protein bS6, fully modified isoform

Small ribosomal subunit protein uS7

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS9

Small ribosomal subunit protein uS10

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS15

Small ribosomal subunit protein bS16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

Small ribosomal subunit protein uS19

Small ribosomal subunit protein bS20

Small ribosomal subunit protein bS21

Large ribosomal subunit protein uL2

Large ribosomal subunit protein uL3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein bL9

Large ribosomal subunit protein uL13

50S ribosomal protein L14

50S ribosomal protein L15

Large ribosomal subunit protein uL16

50S ribosomal protein L17

50S ribosomal protein L18

50S ribosomal protein L19

50S ribosomal protein L20

50S ribosomal protein L21

50S ribosomal protein L22

50S ribosomal protein L23

50S ribosomal protein L24

50S ribosomal protein L25

50S ribosomal protein L27

50S ribosomal protein L28

50S ribosomal protein L29

50S ribosomal protein L30

50S ribosomal protein L32

50S ribosomal protein L33

50S ribosomal protein L34

50S ribosomal protein L35

50S ribosomal protein L36

Large ribosomal subunit protein bL31A

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