SMTL ID : 8r6c.1

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 2.20 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x YF5- DAL- YFQ- ORD- YFZ- YFQ- GLY- SPD: Paenilamicin B2(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
308 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
3 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Koller, T.O. et al., Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv (2024)
Release Date
2024-07-24
Peptides
Large ribosomal subunit protein bL33: A
Large ribosomal subunit protein bL34: B
Large ribosomal subunit protein bL35: C
Large ribosomal subunit protein bL36A: D
Large ribosomal subunit protein bL31A: E
30S ribosomal protein S2: H
Small ribosomal subunit protein uS3: I
Small ribosomal subunit protein uS4: J
Small ribosomal subunit protein uS5: K
30S ribosomal protein S6, fully modified isoform: L
30S ribosomal protein S7: M
Small ribosomal subunit protein uS8: N
Small ribosomal subunit protein uS9: O
Small ribosomal subunit protein uS10: P
Small ribosomal subunit protein uS11: Q
Small ribosomal subunit protein uS12: R
Small ribosomal subunit protein uS13: S
Small ribosomal subunit protein uS14: T
Small ribosomal subunit protein uS15: U
30S ribosomal protein S16: V
Small ribosomal subunit protein uS17: W
Small ribosomal subunit protein bS18: X
Small ribosomal subunit protein uS19: Y
30S ribosomal protein S20: Z
Small ribosomal subunit protein bS21: 0
Large ribosomal subunit protein uL2: 6
Large ribosomal subunit protein uL3: 7
Large ribosomal subunit protein uL4: 8
Large ribosomal subunit protein uL5: 9
Large ribosomal subunit protein uL6: a
Large ribosomal subunit protein bL9: b
Large ribosomal subunit protein uL13: c
Large ribosomal subunit protein uL14: d
50S ribosomal protein L15: e
Large ribosomal subunit protein uL16: f
Large ribosomal subunit protein bL17: g
Large ribosomal subunit protein uL18: h
Large ribosomal subunit protein bL19: i
Large ribosomal subunit protein bL20: j
Large ribosomal subunit protein bL21: k
Large ribosomal subunit protein uL22: l
Large ribosomal subunit protein uL23: m
Large ribosomal subunit protein uL24: n
50S ribosomal protein L25: o
Large ribosomal subunit protein bL27: p
Large ribosomal subunit protein bL28: q
Large ribosomal subunit protein uL29: r
Large ribosomal subunit protein uL30: s
Large ribosomal subunit protein bL32: t
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
2
D
3
E
4
H
B
I
C
J
D
K
E
L
F
M
G
N
H
O
I
P
J
Q
K
R
L
S
M
T
N
U
O
V
P
W
Q
X
R
Y
S
Z
T
0
U
6
c
7
d
8
e
9
f
a
g
b
h
c
i
d
j
e
k
f
l
g
m
h
n
i
o
j
p
k
q
l
r
m
s
n
t
o
u
p
v
q
w
r
x
s
y
t
z

Large ribosomal subunit protein bL33

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

Large ribosomal subunit protein bL36A

Large ribosomal subunit protein bL31A

30S ribosomal protein S2

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS4