SMTL ID : 8q4f.1

Structure of arbekacin bound Escherichia coli 70S ribosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x 84G: Arbekacin(Non-functional Binders)

84G.1: 13 residues within 4Å: Chain F: C.1404, G.1405, U.1406, C.1407, A.1408, C.1409, G.1491, A.1492, A.1493, G.1494, U.1495, C.1496, G.1497 No protein-ligand interaction detected (PLIP) 84G.2: 10 residues within 4Å: Chain 1: C.74, C.75 Chain 2: C.2064, C.2065, G.2252, G.2253, C.2254, G.2436, G.2437, A.2600 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Majumdar, S. et al., Structure of arbekacin bound Escherichia coli 70S ribosome. To be published

Release Date

2024-08-14

Peptides

Large ribosomal subunit protein bL33: A
Large ribosomal subunit protein bL34: B
Large ribosomal subunit protein bL35: C
Large ribosomal subunit protein bL36A: D
Large ribosomal subunit protein bL31A: E
Small ribosomal subunit protein uS2: G
Small ribosomal subunit protein uS3: H
Small ribosomal subunit protein uS4: I
Small ribosomal subunit protein uS5: J
Small ribosomal subunit protein bS6, fully modified isoform: K
Small ribosomal subunit protein uS7: L
Small ribosomal subunit protein uS8: M
Small ribosomal subunit protein uS9: N
Small ribosomal subunit protein uS10: O
Small ribosomal subunit protein uS11: P
Small ribosomal subunit protein uS12: Q
Small ribosomal subunit protein uS13: R
Small ribosomal subunit protein uS14: S
Small ribosomal subunit protein uS15: T
Small ribosomal subunit protein bS16: U
Small ribosomal subunit protein uS17: V
Small ribosomal subunit protein bS18: W
Small ribosomal subunit protein uS19: X
Small ribosomal subunit protein bS20: Y
Small ribosomal subunit protein bS21: Z
Large ribosomal subunit protein uL2: 4
50S ribosomal protein L3: 5
Large ribosomal subunit protein uL4: 6
Large ribosomal subunit protein uL5: 7
Large ribosomal subunit protein uL6: 8
Large ribosomal subunit protein uL13: 9
Large ribosomal subunit protein uL14: a
Large ribosomal subunit protein uL15: b
50S ribosomal protein L16: c
Large ribosomal subunit protein bL17: d
Large ribosomal subunit protein uL18: e
Large ribosomal subunit protein bL19: f
Large ribosomal subunit protein bL20: g
Large ribosomal subunit protein bL21: h
Large ribosomal subunit protein uL23: i
Large ribosomal subunit protein uL24: j
Large ribosomal subunit protein bL25: k
Large ribosomal subunit protein bL27: l
Large ribosomal subunit protein bL28: m
Large ribosomal subunit protein uL29: n
Large ribosomal subunit protein uL30: o
Large ribosomal subunit protein bL32: p

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

G
B

H
C

I
D

J
E

K
F

L
G

M
H

N
I

O
J

P
K

Q
L

R
M

S
N

T
O

U
P

V
Q

W
R

X
S

Y
T

Z
U

4
c

5
d

6
e

7
f

8
g

9
i

a
j

b
k

c
l

d
m

e
n

f
o

g
p

h
q

i
s

j
t

k
u

l
v

m
w

n
x

o
y

p
z

Large ribosomal subunit protein bL33

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

Large ribosomal subunit protein bL36A

Large ribosomal subunit protein bL31A

Small ribosomal subunit protein uS2

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

Small ribosomal subunit protein bS6, fully modified isoform

Small ribosomal subunit protein uS7

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS9

Small ribosomal subunit protein uS10

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS15

Small ribosomal subunit protein bS16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

Small ribosomal subunit protein uS19

Small ribosomal subunit protein bS20

Small ribosomal subunit protein bS21

Large ribosomal subunit protein uL2

50S ribosomal protein L3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL14

Large ribosomal subunit protein uL15

50S ribosomal protein L16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

Large ribosomal subunit protein bL25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

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