8r8m.1 | SWISS-MODEL Template Library

SMTL ID : 8r8m.1

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.40 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x YF5- DAL- YFQ- ORD- YFZ- YFQ- GLY- SPD: Paenilamicin B2(Non-covalent)

2 x ZN: ZINC ION(Non-covalent)

307 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

2 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Koller, T.O. et al., Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv (2024)

Release Date

2024-07-24

Peptides

Large ribosomal subunit protein bL33: A
Large ribosomal subunit protein bL34: B
Large ribosomal subunit protein bL35: C
Large ribosomal subunit protein bL36A: D
Large ribosomal subunit protein uL2: F
Large ribosomal subunit protein uL3: G
Large ribosomal subunit protein uL4: H
Large ribosomal subunit protein uL5: I
Large ribosomal subunit protein uL6: J
Large ribosomal subunit protein bL9: K
Large ribosomal subunit protein uL13: L
Large ribosomal subunit protein uL14: M
50S ribosomal protein L15: N
Large ribosomal subunit protein uL16: O
Large ribosomal subunit protein bL17: P
Large ribosomal subunit protein uL18: Q
Large ribosomal subunit protein bL19: R
Large ribosomal subunit protein bL20: S
Large ribosomal subunit protein bL21: T
Large ribosomal subunit protein uL22: U
Large ribosomal subunit protein uL23: V
Large ribosomal subunit protein uL24: W
50S ribosomal protein L25: X
Large ribosomal subunit protein bL27: Y
Large ribosomal subunit protein bL28: Z
Large ribosomal subunit protein uL29: 0
Large ribosomal subunit protein uL30: 1
Large ribosomal subunit protein bL32: 2
Large ribosomal subunit protein bL31A: 4
Small ribosomal subunit protein uS3: 7
Small ribosomal subunit protein uS9: 8
Small ribosomal subunit protein uS10: 9
Small ribosomal subunit protein uS13: a
Small ribosomal subunit protein uS14: b
Small ribosomal subunit protein uS19: c
30S ribosomal protein S7: d
30S ribosomal protein S2: e
Small ribosomal subunit protein uS4: f
Small ribosomal subunit protein uS5: g
30S ribosomal protein S6, fully modified isoform: h
Small ribosomal subunit protein uS8: i
Small ribosomal subunit protein uS15: j
30S ribosomal protein S16: k
Small ribosomal subunit protein uS17: l
Small ribosomal subunit protein bS18: m
30S ribosomal protein S20: n
Small ribosomal subunit protein bS21: o
Small ribosomal subunit protein uS11: p
Small ribosomal subunit protein uS12: q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

F
c

G
d

H
e

I
f

J
g

K
h

L
i

M
j

N
k

O
l

P
m

Q
n

R
o

S
p

T
q

U
r

V
s

W
t

X
u

Y
v

Z
w

0
x

1
y

2
z

4
4

7
C

8
I

9
J

a
M

b
N

c
S

d
G

e
B

f
D

g
E

h
F

i
H

j
O

k
P

l
Q

m
R

n
T

o
U

p
K

q
L

Large ribosomal subunit protein bL33

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

Large ribosomal subunit protein bL36A

Large ribosomal subunit protein uL2

Large ribosomal subunit protein uL3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein bL9

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL14

50S ribosomal protein L15

Large ribosomal subunit protein uL16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

50S ribosomal protein L25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL31A

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS9

Small ribosomal subunit protein uS10

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS19

30S ribosomal protein S7

30S ribosomal protein S2

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

30S ribosomal protein S6, fully modified isoform

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS15

30S ribosomal protein S16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

30S ribosomal protein S20

Small ribosomal subunit protein bS21

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

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