8pkl.1 | SWISS-MODEL Template Library

SMTL ID : 8pkl.1

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

2 x PUT: 1,4-DIAMINOBUTANE(Non-functional Binders)

1 x SPD: SPERMIDINE(Non-covalent)

287 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

1 x ALA: ALANINE(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Flugel, T. et al., Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun (2024)

Release Date

2024-03-06

Peptides

50S ribosomal protein L36: A
50S ribosomal protein L28: B
50S ribosomal protein L29: C
50S ribosomal protein L30: D
Large ribosomal subunit protein bL31A: E
50S ribosomal protein L32: F
50S ribosomal protein L35: G
Small ribosomal subunit protein uS2: K
Small ribosomal subunit protein uS3: L
Small ribosomal subunit protein uS4: M
Small ribosomal subunit protein uS5: N
30S ribosomal protein S6: O
30S ribosomal protein S7: P
Small ribosomal subunit protein uS8: Q
Small ribosomal subunit protein uS9: R
30S ribosomal protein S10: S
Small ribosomal subunit protein uS11: T
Small ribosomal subunit protein uS12: U
Small ribosomal subunit protein uS13: V
Small ribosomal subunit protein uS14: W
30S ribosomal protein S15: X
30S ribosomal protein S16: Y
Small ribosomal subunit protein uS17: Z
Small ribosomal subunit protein bS18: 0
Small ribosomal subunit protein uS19: 1
Small ribosomal subunit protein bS20: 2
30S ribosomal protein S21: 3
Large ribosomal subunit protein uL1: 8
50S ribosomal protein L2: 9
50S ribosomal protein L3: a
50S ribosomal protein L4: b
50S ribosomal protein L5: c
50S ribosomal protein L6: d
50S ribosomal protein L33: e
50S ribosomal protein L16: f
50S ribosomal protein L9: g
Large ribosomal subunit protein uL10: h
50S ribosomal protein L11: i
50S ribosomal protein L34: j
50S ribosomal protein L13: k
50S ribosomal protein L14: l
50S ribosomal protein L15: m
Nascent peptide: n
50S ribosomal protein L17: o
50S ribosomal protein L18: p
50S ribosomal protein L19: q
50S ribosomal protein L20: r
50S ribosomal protein L21: s
50S ribosomal protein L22: t
50S ribosomal protein L23: u
50S ribosomal protein L24: v
50S ribosomal protein L25: w
50S ribosomal protein L27: x

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
5

G
6

K
B

L
C

M
D

N
E

O
F

P
G

Q
H

R
I

S
J

T
K

U
L

V
M

W
N

X
O

Y
P

Z
Q

0
R

1
S

2
T

3
U

8
a

9
b

a
c

b
d

c
e

d
f

e
g

f
h

g
i

h
j

i
k

j
l

k
m

l
n

m
o

n
p

o
q

p
r

q
s

r
t

s
u

t
v

u
w

v
x

w
y

x
z

50S ribosomal protein L36

50S ribosomal protein L28

50S ribosomal protein L29

50S ribosomal protein L30

Large ribosomal subunit protein bL31A

50S ribosomal protein L32

50S ribosomal protein L35

Small ribosomal subunit protein uS2

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

30S ribosomal protein S6

30S ribosomal protein S7

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS9

30S ribosomal protein S10

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

30S ribosomal protein S15

30S ribosomal protein S16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

Small ribosomal subunit protein uS19

Small ribosomal subunit protein bS20

30S ribosomal protein S21

Large ribosomal subunit protein uL1

50S ribosomal protein L2

50S ribosomal protein L3

50S ribosomal protein L4

50S ribosomal protein L5

50S ribosomal protein L6

50S ribosomal protein L33

50S ribosomal protein L16

50S ribosomal protein L9

Large ribosomal subunit protein uL10

50S ribosomal protein L11

50S ribosomal protein L34

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

Nascent peptide

50S ribosomal protein L17

50S ribosomal protein L18

50S ribosomal protein L19

50S ribosomal protein L20

50S ribosomal protein L21

50S ribosomal protein L22

50S ribosomal protein L23

50S ribosomal protein L24

50S ribosomal protein L25

50S ribosomal protein L27

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