SMTL ID : 8t9g.1

Automethylated PRC2 dimer bound to nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-1-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 15 residues within 4Å: Chain B: V.628, A.629, G.630, W.631, M.669, C.670, S.671, F.693, A.694, N.695, H.696, Y.733, Y.743, V.744, I.746 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.629 Hydrogen bonds: B:W.631, B:F.693, B:A.694, B:H.696, B:H.696 SAH.2: 12 residues within 4Å: Chain R: V.628, A.629, G.630, W.631, M.669, N.695, H.696, Y.733, Y.743, V.744, G.745, I.746 7 PLIP interactions: 7 interactions with chain R Hydrogen bonds: R:W.631, R:M.669, R:F.693, R:N.695, R:H.696, R:I.746, R:I.746

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauer, P.V. et al., Activation of automethylated PRC2 by dimerization on chromatin. Mol.Cell (2024)

Release Date

2024-09-25

Peptides

Polycomb protein SUZ12: AQ
Histone-lysine N-methyltransferase EZH2: BR
Polycomb protein EED: CS
Histone-binding protein RBBP4: DT
Zinc finger protein AEBP2: EU
Histone H3.2: FN
Histone H4: HO
Histone H2A type 1: IL
Histone H2B 1.1: JM
activating methylated peptide: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Q
G

B
C

R
I

C
F

S
K

D
L

T
O

E
M

U
Y

F
A

N
W

H
J

O
X

I
R

L
U

J
S

M
V

P
E

Polycomb protein SUZ12

Histone-lysine N-methyltransferase EZH2

Polycomb protein EED

Histone-binding protein RBBP4

Zinc finger protein AEBP2

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B 1.1

activating methylated peptide

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