SMTL ID : 9f2o.1 (1 other biounit)

Structure of human carbonic anhydrase XII complexed with 3-(cyclooctylamino)-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)-5- methoxybenzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.91, H.93, E.104, H.117 Ligands: 01.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.8: 6 residues within 4Å: Chain B: H.91, H.93, E.104, H.117, T.198 Ligands: 01.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: N.71, L.72, T.88 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.72 Water bridges: A:T.88, A:T.88 EDO.3: 5 residues within 4Å: Chain A: D.156, F.159, S.160, Q.221, A.224 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: Q.27, Q.250, K.251 Chain B: N.13 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.251, B:N.13 Water bridges: A:G.24, A:Q.250, B:E.12 EDO.5: 8 residues within 4Å: Chain A: S.42, L.43, T.44, L.46, G.80, L.81, Y.190, R.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.190, A:R.192, A:R.192 Water bridges: A:S.42 EDO.9: 7 residues within 4Å: Chain B: L.43, T.44, L.46, G.80, L.81, Y.190, R.192 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.192, B:R.192 EDO.10: 5 residues within 4Å: Chain B: D.156, F.159, S.160, Q.221, A.224 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.162 EDO.11: 5 residues within 4Å: Chain B: A.55, K.157, P.175, G.176, F.177 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.157 Water bridges: B:K.157

2 x 01: 3-(cyclooctylamino)-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)-5- methoxybenzenesulfonamide

01.6: 18 residues within 4Å: Chain A: W.4, N.64, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.133, V.141, L.197, T.198, T.199, P.200, P.201 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.129, A:L.197 Hydrogen bonds: A:E.104, A:T.198 Water bridges: A:W.4 pi-Cation interactions: A:H.91 01.12: 18 residues within 4Å: Chain B: N.64, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.133, V.141, L.197, T.198, T.199, P.200, P.201, W.208 Ligands: ZN.8 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.119, B:A.129, B:L.197 Hydrogen bonds: B:E.104, B:T.198, B:T.199 Water bridges: B:W.4, B:Y.6 pi-Cation interactions: B:H.91

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 3 residues within 4Å: Chain A: Q.110, H.111, F.112 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.112

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.13: 4 residues within 4Å: Chain B: G.50, N.52, D.75, H.77 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.52, B:H.77 Water bridges: B:G.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manakova, E.N. et al., Structure of human carbonic anhydrase XII complexed with 3-(cyclooctylamino)-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)-5-methoxybenzenesulfonamide. To Be Published

Release Date

2025-05-14

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbonic anhydrase 12

Related Entries With Identical Sequence