SMTL ID : 9f30.1 (1 other biounit)

Human carbonic anhydrase XII with 3-(Cyclooctylamino)-5-ethoxy-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.91, H.93, E.104, H.117 Ligands: 01.8 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.9: 5 residues within 4Å: Chain B: H.91, H.93, E.104, H.117 Ligands: 01.17 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: D.40, S.42, R.192, Y.258 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.40 pi-Cation interactions: A:Y.258

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: S.42, L.43, T.44, L.46, G.80, L.81, Y.190, R.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.190, A:R.192, A:R.192 EDO.4: 5 residues within 4Å: Chain A: L.125, Y.126, P.127, T.131, K.135 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.125 EDO.5: 5 residues within 4Å: Chain A: D.156, F.159, S.160, Q.221, A.224 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: F.7, I.243, N.244 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.244 Water bridges: A:I.243, A:I.243, A:I.243, A:I.243 EDO.7: 4 residues within 4Å: Chain A: W.4, Y.19, P.200 Ligands: 01.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.19, A:Y.19 EDO.10: 5 residues within 4Å: Chain B: Y.39, D.40, A.41, L.43, S.260 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.39, B:Y.39, B:L.43, B:L.43 EDO.11: 7 residues within 4Å: Chain B: L.32, H.33, S.34, L.37, V.107, S.108, Y.191 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.108, B:Y.191 Water bridges: B:S.34, B:S.34 EDO.12: 5 residues within 4Å: Chain B: L.37, Y.39, T.259, F.261, S.262 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.39, B:T.259 EDO.13: 5 residues within 4Å: Chain B: T.62, N.63, N.64, K.69, G.169 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.69, B:K.69 Water bridges: B:G.169, B:E.171 EDO.14: 3 residues within 4Å: Chain B: H.233, M.234, D.235 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.234, B:D.235, B:D.235 EDO.15: 4 residues within 4Å: Chain B: V.107, F.112, R.212, P.214 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.191 EDO.16: 5 residues within 4Å: Chain B: F.151, D.156, F.159, E.220, Q.221 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.156, B:D.156

2 x 01: 3-(Cyclooctylamino)-5-ethoxy-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide

01.8: 22 residues within 4Å: Chain A: W.4, Y.6, N.64, H.66, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.133, V.141, L.197, T.198, T.199, P.200, P.201, W.208 Ligands: ZN.1, EDO.7 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.66, A:V.119, A:A.129, A:L.197, A:T.199 Hydrogen bonds: A:T.198 pi-Cation interactions: A:H.91 01.17: 21 residues within 4Å: Chain B: Y.6, N.64, H.66, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.130, S.133, V.141, L.197, T.198, T.199, P.200, P.201, W.208 Ligands: ZN.9 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.119, B:A.129, B:L.197, B:T.199 Hydrogen bonds: B:H.91, B:T.198, B:T.199, B:P.200 pi-Cation interactions: B:H.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manakova, E. et al., Human carbonic anhydrase XII with 3-(Cyclooctylamino)-5-ethoxy-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide. To Be Published

Release Date

2025-05-14

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbonic anhydrase 12

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