SMTL ID : 9f3g.1 (1 other biounit)

Human carbonic anhydrase XII with 3-(cyclooctylamino)-2,6-difluoro-5-((4-hydroxybutyl)amino)-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.91, H.93, E.104, H.117 Ligands: 01.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.7: 5 residues within 4Å: Chain B: H.91, H.93, E.104, H.117 Ligands: 01.13 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: N.71, L.72, T.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.71, A:L.72 EDO.3: 4 residues within 4Å: Chain A: S.133, P.201, N.203 Ligands: 01.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.133, A:N.203 EDO.4: 6 residues within 4Å: Chain A: Y.39, D.40, A.41, L.43, T.44, S.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.43, A:S.260 EDO.8: 7 residues within 4Å: Chain B: L.43, T.44, L.46, G.80, L.81, Y.190, R.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.44, B:R.192, B:R.192 EDO.9: 4 residues within 4Å: Chain B: F.151, N.152, P.153, E.181 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.151, B:N.152, B:E.181 Water bridges: B:S.154 EDO.10: 3 residues within 4Å: Chain B: H.233, M.234, D.235 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.234, B:D.235 EDO.11: 5 residues within 4Å: Chain B: D.156, F.159, S.160, Q.221, A.224 No protein-ligand interaction detected (PLIP) EDO.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 3 residues within 4Å: Chain A: D.40, R.192, Y.258 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.42 Salt bridges: A:D.40 pi-Cation interactions: A:Y.258

2 x 01: 3-(cyclooctylamino)-2,6-bis(fluoranyl)-5-(4-oxidanylbutylamino)-4-[(~{E})-3-oxidanylprop-1-enyl]sulfonyl-benzenesulfonamide

01.6: 20 residues within 4Å: Chain A: W.4, Y.6, N.64, H.66, S.67, Q.89, H.91, L.92, H.93, E.104, H.117, V.119, A.129, S.133, L.197, T.198, T.199, N.245 Ligands: ZN.1, EDO.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.4, A:Y.6, A:H.66, A:V.119, A:L.197, A:T.199 Hydrogen bonds: A:Q.89, A:E.104, A:T.198, A:N.245 pi-Cation interactions: A:H.91 01.13: 22 residues within 4Å: Chain B: W.4, Y.6, N.64, H.66, S.67, Q.89, H.91, L.92, H.93, E.104, H.117, V.119, A.129, S.130, S.133, V.141, L.197, T.198, T.199, W.208, N.245 Ligands: ZN.7 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:H.66, B:A.129, B:L.197, B:T.199 Hydrogen bonds: B:Y.6, B:N.64, B:E.104, B:T.198, B:T.199, B:T.199, B:N.245 pi-Cation interactions: B:H.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manakova, E. et al., Human carbonic anhydrase XII with 3-(cyclooctylamino)-2,6-difluoro-5-((4-hydroxybutyl)amino)-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide. To Be Published

Release Date

2025-05-14

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbonic anhydrase 12

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