SMTL ID : 9f30.2 (1 other biounit)

Human carbonic anhydrase XII with 3-(Cyclooctylamino)-5-ethoxy-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.91, H.93, E.104, H.117 Ligands: 01.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.12: 5 residues within 4Å: Chain B: H.91, H.93, E.104, H.117 Ligands: 01.20 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: L.37, T.259, F.261 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.39 DMS.13: 3 residues within 4Å: Chain B: R.192, R.194, Y.258 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.194

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: Y.39, D.40, A.41, L.43, T.44, S.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.40, A:L.43 EDO.4: 5 residues within 4Å: Chain A: Q.163, K.166, Y.167, Q.170, M.234 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.170 Water bridges: A:Q.163 EDO.5: 5 residues within 4Å: Chain A: K.251, D.253 Chain B: F.7, N.244, F.246 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.244, A:D.253 EDO.6: 5 residues within 4Å: Chain A: W.4, Y.19, P.200, P.201 Ligands: 01.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.19 EDO.7: 5 residues within 4Å: Chain A: D.99, H.101, H.111, F.246 Chain B: H.33 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:D.99, A:H.101, B:D.31 EDO.8: 3 residues within 4Å: Chain A: T.88, Q.89 Ligands: 01.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.88 Water bridges: A:S.130 EDO.9: 8 residues within 4Å: Chain A: S.42, L.43, T.44, L.46, G.80, L.81, Y.190, R.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.190, A:R.192, A:R.192 Water bridges: A:S.42 EDO.10: 2 residues within 4Å: Chain A: P.20, G.24 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.21, A:G.23, A:L.25 EDO.14: 5 residues within 4Å: Chain B: D.156, F.159, S.160, Q.221, A.224 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.162 EDO.15: 4 residues within 4Å: Chain B: N.64, K.168, G.169, H.233 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.64 EDO.16: 6 residues within 4Å: Chain A: E.254 Chain B: N.96, P.97, N.98, E.241, I.243 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.98 Water bridges: B:E.241, B:E.241 EDO.17: 8 residues within 4Å: Chain B: S.42, L.43, T.44, L.46, G.80, L.81, Y.190, R.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.42, B:R.192, B:R.192 EDO.18: 5 residues within 4Å: Chain B: Y.6, F.7, G.8, G.11, E.12 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.8, B:E.12 Water bridges: B:G.8, B:E.12, B:N.13, A:G.24 EDO.19: 3 residues within 4Å: Chain B: K.57, Q.58, F.59 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.58 Water bridges: B:Q.58

2 x 01: 3-(Cyclooctylamino)-5-ethoxy-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide

01.11: 22 residues within 4Å: Chain A: W.4, Y.6, N.64, H.66, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.130, S.133, V.141, L.197, T.198, T.199, P.200 Ligands: ZN.1, EDO.6, EDO.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.66, A:A.129, A:L.197, A:T.199 Hydrogen bonds: A:E.104, A:T.198 pi-Cation interactions: A:H.91 01.20: 20 residues within 4Å: Chain B: Y.6, N.64, H.66, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.133, V.141, L.197, T.198, T.199, P.200, P.201, W.208 Ligands: ZN.12 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.129, B:L.197, B:T.199 Hydrogen bonds: B:H.91, B:T.198, B:T.199 Water bridges: B:W.4, B:W.4, B:Q.89 pi-Cation interactions: B:H.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manakova, E. et al., Human carbonic anhydrase XII with 3-(Cyclooctylamino)-5-ethoxy-2,6-difluoro-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide. To Be Published

Release Date

2025-05-14

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Carbonic anhydrase 12

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