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SMTL ID : 9gfv.1

HUMAN CARBONIC ANHYDRASE II IN COMPLEX WITH 4-methylphenyl-boronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: 01.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 01: (4-methylphenyl)-tris(oxidanyl)boron

01.2:

11 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, L.197, T.198, T.199, W.208
Ligands: ZN.1, GOL.3

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:V.121, A:L.197
Hydrogen bonds: A:T.198, A:T.198

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:	8 residues within 4Å: Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199 Ligands: 01.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92 Water bridges: A:N.67, A:T.199
GOL.4:	5 residues within 4Å: Chain A: Y.7, P.13, D.242, W.244, P.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.7 Water bridges: A:D.242

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Esposito, D. et al., Exploring the binding mode of phenyl and vinyl boronic acids to human carbonic anhydrases. Int.J.Biol.Macromol. (2024)

Release Date

2024-11-06

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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