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SMTL ID : 9gfw.1

HUMAN CARBONIC ANHYDRASE II IN COMPLEX WITH 4-methylphenyl-boronic acid at pH 7.4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: 01.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 01: (4-methylphenyl)-tris(oxidanyl)boron

01.2:

11 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, L.197, T.198, T.199, W.208
Ligands: ZN.1, GOL.3

3 PLIP interactions:

3 interactions with chain A

Hydrophobic interactions: A:V.121, A:L.197
Hydrogen bonds: A:T.198

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: 01.2

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:N.67, A:T.199

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

3 residues within 4Å:

Chain A: Y.7, D.242, W.244

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.5:

5 residues within 4Å:

Chain A: Q.135, Q.136, P.137, E.204, C.205

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:E.204, H₂O.3

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Esposito, D. et al., Exploring the binding mode of phenyl and vinyl boronic acids to human carbonic anhydrases. Int.J.Biol.Macromol. (2024)

Release Date

2024-11-06

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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