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SMTL ID : 9h7g.1

Human Transthyretin in Complex with 1H-indole-3-carbonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1:	2 residues within 4Å: Chain A: E.66, D.99 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.66, A:D.99, A:D.99, H₂O.2, H₂O.2
CA.3:	1 residues within 4Å: Chain B: F.44 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:F.44, H₂O.2

2 x 98Z: 1~{H}-indole-3-carbonitrile(Non-covalent)

98Z.2:	5 residues within 4Å: Chain A: L.17, A.108, A.109, L.110, S.117 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.110, A:L.110 Hydrogen bonds: A:S.117
98Z.4:	4 residues within 4Å: Chain B: L.17, A.108, L.110, S.117 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.110 Hydrogen bonds: B:S.117

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chen, W., Fragment-Based Drug Discovery for Transthyretin Kinetic Stabilisers Using a Novel Capillary Zone Electrophoresis Method. Biorxiv (2025)

Release Date

2025-03-12

Peptides

Transthyretin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Transthyretin

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