A0A024B7W1 (POLG_ZIKVF) Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) (ZIKV)
Genome polyprotein UniProtKBInterProInteractive Modelling
3423 aa; Sequence (Fasta) Identical sequences: Zika virus: A0A2H4GY08
Molecule Processing
| Capsid protein C | |
| Protein prM | |
| Peptide pr | |
| Small envelope protein M | |
| Envelope protein E | |
| Non-structural protein 1 | |
| Non-structural protein 2A | |
| Serine protease subunit NS2B | |
| Serine protease NS3 | |
| Non-structural protein 4A | |
| Non-structural protein 4B | |
| RNA-directed RNA polymerase NS5 |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1553 | Charge relay system; for serine protease NS3 activity | ||
| 1577 | Charge relay system; for serine protease NS3 activity | ||
| 1637 | Charge relay system; for serine protease NS3 activity | ||
| 2581 | For 2'-O-MTase activity | ||
| 2666 | For 2'-O-MTase activity | ||
| 2702 | For 2'-O-MTase activity | ||
| 2738 | For 2'-O-MTase activity | ||
| 2959 | Zinc 1 | ||
| 2963 | Zinc 1; via tele nitrogen | ||
| 2968 | Zinc 1 | ||
| 2971 | Zinc 1 | ||
| 3234 | Zinc 2; via tele nitrogen | ||
| 3250 | Zinc 2 | ||
| 3369 | Zinc 2 | ||
| 139 | Fetal microcephaly | ||
| 1958 | Involved in NS3 ATPase and RTPase activities | ||
| 1961 | Involved in NS3 ATPase and RTPase activities | ||
| 2533 | mRNA cap binding | ||
| 2536 | mRNA cap binding; via carbonyl oxygen | ||
| 2537 | mRNA cap binding | ||
| 2539 | mRNA cap binding; via carbonyl oxygen | ||
| 2544 | mRNA cap binding | ||
| 2548 | mRNA cap binding | ||
| 2581 | Essential for 2'-O-methyltransferase activity | ||
| 2666 | Essential for 2'-O-methyltransferase and N-7 methyltransferase activity | ||
| 2670 | mRNA cap binding | ||
| 2702 | Essential for 2'-O-methyltransferase activity | ||
| 2733 | mRNA cap binding | ||
| 2735 | mRNA cap binding | ||
| 2738 | Essential for 2'-O-methyltransferase activity | ||
| 105-125 | Helical | ||
| 250-269 | Helical | ||
| 275-290 | Helical | ||
| 746-767 | Helical | ||
| 774-794 | Helical | ||
| 1178-1198 | Helical | ||
| 1221-1241 | Helical | ||
| 1271-1291 | Helical | ||
| 1296-1316 | Helical | ||
| 1346-1366 | Helical | ||
| 1374-1394 | Helical | ||
| 1398-1418 | Helical | ||
| 1473-1493 | Helical | ||
| 2171-2191 | Helical | ||
| 2196-2216 | Helical | ||
| 2219-2239 | Helical | ||
| 2255-2269 | Helical; Note=Signal for NS4B | ||
| 2308-2328 | Helical | ||
| 2345-2365 | Helical | ||
| 2376-2396 | Helical | ||
| 2442-2462 | Helical | ||
| 1696-1703 | ATP | ||
| 2533-2539 | GTP | ||
| 2669-2675 | GTP | ||
| 2733-2735 | GTP | ||
| 104-105 | Cleavage; by viral protease NS3 | ||
| 122-123 | Cleavage; by host signal peptidase | ||
| 215-216 | Cleavage; by host furin | ||
| 290-291 | Cleavage; by host signal peptidase | ||
| 794-795 | Cleavage; by host signal peptidase | ||
| 1146-1147 | Cleavage; by host | ||
| 1372-1373 | Cleavage; by viral protease NS3 | ||
| 1502-1503 | Cleavage; by autolysis | ||
| 2119-2120 | Cleavage; by autolysis | ||
| 2246-2247 | Cleavage; by viral protease NS3 | ||
| 2269-2270 | Cleavage; by host signal peptidase | ||
| 2520-2521 | Cleavage; by viral protease NS3 | ||
| 350-406 | |||
| 382-411 | |||
| 480-581 | |||
| 598-629 | |||
| 798-809 | |||
| 849-937 | |||
| 973-1017 | |||
| 1074-1123 | |||
| 1085-1106 | |||
| 1107-1110 | |||
| 6-122 | Flavivirus capsid protein C IPR001122PF01003 | ||
| 128-214 | Flavivirus polyprotein propeptide IPR002535PF01570 | ||
| 217-290 | Envelope glycoprotein M, flavivirus IPR000069PF01004 | ||
| 292-592 | Flavivirus glycoprotein central and dimerisation domain IPR011998PF00869 | ||
| 594-692 | Flavivirus glycoprotein E, immunoglobulin-like domain IPR027287PF02832 | ||
| 797-1148 | Flavivirus non-structural protein NS1 IPR001157PF00948 | ||
| 1158-1310 | Flavivirus non-structural protein NS2A IPR000752PF01005 | ||
| 1378-1502 | Flavivirus non-structural protein NS2B IPR000487PF01002 | ||
| 1519-1669 | Flavivirus NS3, petidase S7 IPR001850PF00949 | ||
| 1687-1833 | DEAD box, Flavivirus IPR011492PF07652 | ||
| 2126-2268 | Flavivirus non-structural protein NS4A IPR000404PF01350 | ||
| 2270-2510 | Flavivirus non-structural protein NS4B IPR001528PF01349 | ||
| 2575-2743 | Ribosomal RNA methyltransferase FtsJ domain IPR002877PF01728 | ||
| 2772-3416 | RNA-directed RNA polymerase, flavivirus IPR000208PF00972 |
Sequence Alignments
Protein prM 123-290; PRO_0000443021
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab |
Heteromer | 6lnt | ||||
| Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0 |
Heteromer | 5×NAG; | 5h37 | |||
| Cryo-EM structure of thermally stable Zika virus strain H/PF/2013 |
Heteromer | 18×NAG; | 5iz7 | |||
| Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5 |
Heteromer | 15×NAG; | 7bu8 | |||
| Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5 |
Heteromer | 5h30 | ||||
| Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0 |
Heteromer | 15×NAG; | 7bua | |||
| The cryo-EM structure of Zika Virus |
Heteromer | 18×NAG; | 5ire | |||
| Structure of Zika virus at a resolution of 3.1 Angstrom |
Heteromer | 18×NAG; | 6co8 | |||
| Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing hum… |
Heteromer | 18×NAG; | 6mid | |||
| CryoEM structure of Zika virus with Fab at 4.1 Angstrom |
Heteromer | 6×NAG; | 7cbp | |||
| The symmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex |
Heteromer | 6jfi | ||||
| The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex |
Heteromer | 6jfh | ||||
| Cryo-EM Structure of Immature Zika Virus |
Heteromer A0A0B4L3F2; O11875; | 60×NAG; 30×BMA; | 5u4w | |||
| Cryo-EM structure of immature Zika virus | homo-36-mer | 6lnu |
Small envelope protein M 216-290; PRO_0000443023
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0 |
Heteromer | 5×NAG; | 5h37 | |||
| Cryo-EM structure of thermally stable Zika virus strain H/PF/2013 |
Heteromer | 18×NAG; | 5iz7 | |||
| Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5 |
Heteromer | 15×NAG; | 7bu8 | |||
| Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5 |
Heteromer | 5h30 | ||||
| Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0 |
Heteromer | 15×NAG; | 7bua | |||
| The cryo-EM structure of Zika Virus |
Heteromer | 18×NAG; | 5ire | |||
| Structure of Zika virus at a resolution of 3.1 Angstrom |
Heteromer | 18×NAG; | 6co8 | |||
| Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing hum… |
Heteromer | 18×NAG; | 6mid | |||
| CryoEM structure of Zika virus with Fab at 4.1 Angstrom |
Heteromer | 6×NAG; | 7cbp | |||
| The symmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex |
Heteromer | 6jfi | ||||
| The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex |
Heteromer | 6jfh | ||||
| Cryo-EM Structure of Immature Zika Virus |
Heteromer A0A0B4L3F2; O11875; | 60×NAG; 30×BMA; | 5u4w |
Envelope protein E 291-794; PRO_0000443024
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab |
Heteromer | 6lnt | ||||
| Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0 |
Heteromer | 5×NAG; | 5h37 | |||
| Cryo-EM structure of thermally stable Zika virus strain H/PF/2013 |
Heteromer | 18×NAG; | 5iz7 | |||
| Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5 |
Heteromer | 15×NAG; | 7bu8 | |||
| Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5 |
Heteromer | 5h30 | ||||
| Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0 |
Heteromer | 15×NAG; | 7bua | |||
| The cryo-EM structure of Zika Virus |
Heteromer | 18×NAG; | 5ire | |||
| Structure of Zika virus at a resolution of 3.1 Angstrom |
Heteromer | 18×NAG; | 6co8 | |||
| Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing hum… |
Heteromer | 18×NAG; | 6mid | |||
| CryoEM structure of Zika virus with Fab at 4.1 Angstrom |
Heteromer | 6×NAG; | 7cbp | |||
| The symmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex |
Heteromer | 6jfi | ||||
| The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex |
Heteromer | 6jfh | ||||
| Cryo-EM Structure of Immature Zika Virus |
Heteromer A0A0B4L3F2; O11875; | 60×NAG; 30×BMA; | 5u4w | |||
| structural basis of Zika and Dengue virus potent antibody cross-neutralization |
Heteromer | 16×EDO; 2×SO4; | 5lbs | |||
| Structural basis of Zika and Dengue virus potent antibody cross-neutralization |
Heteromer | 1×NAG; 1×NAG; 3×GOL; 1×FMT; | 5lcv | |||
| Crystal structure of a human anti-ZIKV-DENV neutralizing antibody MZ1 in complex with ZIKV E glycop… |
Heteromer | 6nip | ||||
| Crystal structure of a human anti-ZIKV-DENV neutralizing antibody MZ4 in complex with ZIKV E glycop… |
Heteromer | 6niu | ||||
| Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree |
Heteromer | 5y0a | ||||
| Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0 |
Heteromer | 5h32 | ||||
| A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection |
Heteromer | 5uhy | ||||
| Crystal structure of ZIKV-116 Fab in complex with ZIKV envelope DIII |
Heteromer | 6plk | ||||
| Zika specific antibody, ZV-48, bound to ZIKA envelope DIII |
Heteromer | 2×NA; 5×SO4; 1×ACT; 2×EDO; | 5kve | |||
| Cryo-EM structure of immature Zika virus | homo-36-mer | 6lnu | ||||
| Structural basis of zika and dengue virus potent antibody cross-neutralization | homo-2-mer | 1×NAG; 1×NA; | 5lbv |
Serine protease subunit NS2B 1373-1502; PRO_0000443027
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| Structure of Zika virus NS2b-NS3 protease mutant stabilizing the super-open conformation | homo-2-mer | 1×EDO; | 6um3 |
Serine protease NS3 1503-2119; PRO_0000443028
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| Structure of Zika virus NS2b-NS3 protease mutant stabilizing the super-open conformation | homo-2-mer | 1×EDO; | 6um3 | |||
| Crystal structure of Zika virus NS3 helicase | monomer | 5jmt | ||||
| Zika virus helicase in complex with ADP | monomer | 1×MN; 1×ADP; | 5y6n | |||
| Zika virus helicase in complex with ADP-AlF3 | monomer | 1×MN; 1×ADP; 1×AF3; | 5y6m |
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) | Download | Assess |
|---|---|---|---|---|---|---|---|
| monomer | -0.19 | 5yw1.1.A | 67.69 | ||||
| monomer | 1×MN; | -0.85 | 2whx.1.A | 68.02 |
RNA-directed RNA polymerase NS5 2521-3423; PRO_0000443032
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| Crystal structure of the full-length Zika virus NS5 protein (Human isolate Z1106033) | monomer | 1×SAH; 2×PO4; 2×ZN; | 6i7p | |||
| Zika NS5 polymerase domain | monomer | 2×ZN; 1×G8O; 1×G8L; | 6ld5 | |||
| Zika NS5 polymerase domain | monomer | 3×EDO; 2×ZN; | 6ld1 | |||
| Zika NS5 polymerase domain | monomer | 2×ZN; 1×KY3; | 6ld2 | |||
| Zika NS5 polymerase domain | monomer | 2×ZN; 1×G8O; 1×G8F; | 6ld4 | |||
| Zika NS5 polymerase domain | monomer | 2×ZN; 1×G8O; 1×FB2; | 6ld3 | |||
| Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine | monomer | 1×SAM; 1×PO4; 1×CL; | 5kqr | |||
| Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine and 7-methyl-guano… | monomer | 1×M7G; 4×GOL; 1×ACT; 1×SAM; 1×PO4; | 5kqs | |||
| Structure of the NS5 methyltransferase from Zika bound to MS2042 | monomer | 1×KB1; 3×CL; 3×URE; 1×IPA; 1×NA; | 5ulp | |||
| Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH | monomer | 1×GTP; 1×SAH; 2×PO4; | 5goz | |||
| Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH | monomer | 5×SO4; 1×GTA; 1×SAH; | 5gp1 | |||
| Flavivirus NS5 domain | monomer | 1×SAM; 2×CL; | 5njv | |||
| Crystal structure of Zika virus NS5 methyltransferase | monomer | 1×SAM; 2×SO4; | 5m5b | |||
| Structural basis of Zika virus methyltransferase inhibition by sinefungin | monomer | 1×SFG; 1×CL; | 5mrk | |||
| Flavivirus NS5 domain | monomer | 1×SAH; 1×MG; | 5nju |