A0A024B7W1 (POLG_ZIKVF) Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) (ZIKV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3423 aa; Sequence (Fasta) Identical sequences: Zika virus: A0A2H4GY08

Molecule Processing
Capsid protein C
Protein prM
Peptide pr
Small envelope protein M
Envelope protein E
Non-structural protein 1
Non-structural protein 2A
Serine protease subunit NS2B
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
RNA-directed RNA polymerase NS5

Sequence Features

 1553Charge relay system; for serine protease NS3 activity
 1577Charge relay system; for serine protease NS3 activity
 1637Charge relay system; for serine protease NS3 activity
 2581For 2'-O-MTase activity
 2666For 2'-O-MTase activity
 2702For 2'-O-MTase activity
 2738For 2'-O-MTase activity
 2959Zinc 1
 2963Zinc 1; via tele nitrogen
 2968Zinc 1
 2971Zinc 1
 3234Zinc 2; via tele nitrogen
 3250Zinc 2
 3369Zinc 2
 139Fetal microcephaly
 1958Involved in NS3 ATPase and RTPase activities
 1961Involved in NS3 ATPase and RTPase activities
 2533mRNA cap binding
 2536mRNA cap binding; via carbonyl oxygen
 2537mRNA cap binding
 2539mRNA cap binding; via carbonyl oxygen
 2544mRNA cap binding
 2548mRNA cap binding
 2581Essential for 2'-O-methyltransferase activity
 2666Essential for 2'-O-methyltransferase and N-7 methyltransferase activity
 2670mRNA cap binding
 2702Essential for 2'-O-methyltransferase activity
 2733mRNA cap binding
 2735mRNA cap binding
 2738Essential for 2'-O-methyltransferase activity
 105-125Helical
 250-269Helical
 275-290Helical
 746-767Helical
 774-794Helical
 1178-1198Helical
 1221-1241Helical
 1271-1291Helical
 1296-1316Helical
 1346-1366Helical
 1374-1394Helical
 1398-1418Helical
 1473-1493Helical
 2171-2191Helical
 2196-2216Helical
 2219-2239Helical
 2255-2269Helical; Note=Signal for NS4B
 2308-2328Helical
 2345-2365Helical
 2376-2396Helical
 2442-2462Helical
 1696-1703ATP
 2533-2539GTP
 2669-2675GTP
 2733-2735GTP
 104-105Cleavage; by viral protease NS3
 122-123Cleavage; by host signal peptidase
 215-216Cleavage; by host furin
 290-291Cleavage; by host signal peptidase
 794-795Cleavage; by host signal peptidase
 1146-1147Cleavage; by host
 1372-1373Cleavage; by viral protease NS3
 1502-1503Cleavage; by autolysis
 2119-2120Cleavage; by autolysis
 2246-2247Cleavage; by viral protease NS3
 2269-2270Cleavage; by host signal peptidase
 2520-2521Cleavage; by viral protease NS3
 350-406
 382-411
 480-581
 598-629
 798-809
 849-937
 973-1017
 1074-1123
 1085-1106
 1107-1110
 6-122Flavivirus capsid protein C
IPR001122PF01003
 128-214Flavivirus polyprotein propeptide
IPR002535PF01570
 217-290Envelope glycoprotein M, flavivirus
IPR000069PF01004
 292-592Flavivirus glycoprotein central and dimerisation domain
IPR011998PF00869
 594-692Flavivirus glycoprotein E, immunoglobulin-like domain
IPR027287PF02832
 797-1148Flavivirus non-structural protein NS1
IPR001157PF00948
 1158-1310Flavivirus non-structural protein NS2A
IPR000752PF01005
 1378-1502Flavivirus non-structural protein NS2B
IPR000487PF01002
 1519-1669Flavivirus NS3, petidase S7
IPR001850PF00949
 1687-1833DEAD box, Flavivirus
IPR011492PF07652
 2126-2268Flavivirus non-structural protein NS4A
IPR000404PF01350
 2270-2510Flavivirus non-structural protein NS4B
IPR001528PF01349
 2575-2743Ribosomal RNA methyltransferase FtsJ domain
IPR002877PF01728
 2772-3416RNA-directed RNA polymerase, flavivirus
IPR000208PF00972

Sequence Alignments

Protein prM 123-290; PRO_0000443021

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab Heteromer
6lnt 128-290
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0 Heteromer
NAG;5h37 216-290
Cryo-EM structure of thermally stable Zika virus strain H/PF/2013 Heteromer
18×NAG;5iz7 216-290
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5 Heteromer
15×NAG;7bu8 216-290
Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5 Heteromer
5h30 216-290
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0 Heteromer
15×NAG;7bua 216-290
The cryo-EM structure of Zika Virus Heteromer
18×NAG;5ire 216-290
Structure of Zika virus at a resolution of 3.1 Angstrom Heteromer
18×NAG;6co8 216-290
Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing hum… Heteromer
18×NAG;6mid 216-290
CryoEM structure of Zika virus with Fab at 4.1 Angstrom Heteromer
NAG;7cbp 216-290
The symmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex Heteromer
6jfi 216-290
The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex Heteromer
6jfh 216-290
Cryo-EM Structure of Immature Zika Virus Heteromer
A0A0B4L3F2; O11875;
60×NAG; 30×BMA;5u4w 238-290
Cryo-EM structure of immature Zika virushomo-36-mer 6lnu 128-290

Small envelope protein M 216-290; PRO_0000443023

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0 Heteromer
NAG;5h37 216-290
Cryo-EM structure of thermally stable Zika virus strain H/PF/2013 Heteromer
18×NAG;5iz7 216-290
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5 Heteromer
15×NAG;7bu8 216-290
Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5 Heteromer
5h30 216-290
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0 Heteromer
15×NAG;7bua 216-290
The cryo-EM structure of Zika Virus Heteromer
18×NAG;5ire 216-290
Structure of Zika virus at a resolution of 3.1 Angstrom Heteromer
18×NAG;6co8 216-290
Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing hum… Heteromer
18×NAG;6mid 216-290
CryoEM structure of Zika virus with Fab at 4.1 Angstrom Heteromer
NAG;7cbp 216-290
The symmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex Heteromer
6jfi 216-290
The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex Heteromer
6jfh 216-290
Cryo-EM Structure of Immature Zika Virus Heteromer
A0A0B4L3F2; O11875;
60×NAG; 30×BMA;5u4w 238-290

Envelope protein E 291-794; PRO_0000443024

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab Heteromer
6lnt 292-794
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0 Heteromer
NAG;5h37 291-794
Cryo-EM structure of thermally stable Zika virus strain H/PF/2013 Heteromer
18×NAG;5iz7 291-794
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5 Heteromer
15×NAG;7bu8 291-794
Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5 Heteromer
5h30 291-794
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0 Heteromer
15×NAG;7bua 291-794
The cryo-EM structure of Zika Virus Heteromer
18×NAG;5ire 291-791
Structure of Zika virus at a resolution of 3.1 Angstrom Heteromer
18×NAG;6co8 291-791
Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing hum… Heteromer
18×NAG;6mid 291-791
CryoEM structure of Zika virus with Fab at 4.1 Angstrom Heteromer
NAG;7cbp 291-791
The symmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex Heteromer
6jfi 291-791
The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex Heteromer
6jfh 291-791
Cryo-EM Structure of Immature Zika Virus Heteromer
A0A0B4L3F2; O11875;
60×NAG; 30×BMA;5u4w 726-791
structural basis of Zika and Dengue virus potent antibody cross-neutralization Heteromer
16×EDO;SO4;5lbs 291-698
Structural basis of Zika and Dengue virus potent antibody cross-neutralization Heteromer
NAG;NAG;GOL;FMT;5lcv 291-698
Crystal structure of a human anti-ZIKV-DENV neutralizing antibody MZ1 in complex with ZIKV E glycop… Heteromer
6nip 291-693
Crystal structure of a human anti-ZIKV-DENV neutralizing antibody MZ4 in complex with ZIKV E glycop… Heteromer
6niu 291-693
Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree Heteromer
5y0a 291-693
Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0 Heteromer
5h32 291-693
A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection Heteromer
5uhy 291-686
Crystal structure of ZIKV-116 Fab in complex with ZIKV envelope DIII Heteromer
6plk 593-695
Zika specific antibody, ZV-48, bound to ZIKA envelope DIII Heteromer
NA;SO4;ACT;EDO;5kve 593-693
Cryo-EM structure of immature Zika virushomo-36-mer 6lnu 292-794
Structural basis of zika and dengue virus potent antibody cross-neutralizationhomo-2-mer NAG;NA;5lbv 291-693

Serine protease subunit NS2B 1373-1502; PRO_0000443027

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of Zika virus NS2b-NS3 protease mutant stabilizing the super-open conformationhomo-2-mer EDO;6um3 1421-1466

Serine protease NS3 1503-2119; PRO_0000443028

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of Zika virus NS2b-NS3 protease mutant stabilizing the super-open conformationhomo-2-mer EDO;6um3 1503-1660
Crystal structure of Zika virus NS3 helicasemonomer 5jmt 1677-2119
Zika virus helicase in complex with ADPmonomer MN;ADP;5y6n 1684-2119
Zika virus helicase in complex with ADP-AlF3monomer MN;ADP;AF3;5y6m 1685-2119
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -0.195yw1.1.A1506-2119
67.69
monomer MN;-0.852whx.1.A1523-2119
68.02

RNA-directed RNA polymerase NS5 2521-3423; PRO_0000443032

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal structure of the full-length Zika virus NS5 protein (Human isolate Z1106033)monomer SAH;PO4;ZN;6i7p 2526-3408
Zika NS5 polymerase domainmonomer ZN;G8O;G8L;6ld5 2790-3407
Zika NS5 polymerase domainmonomer EDO;ZN;6ld1 2793-3407
Zika NS5 polymerase domainmonomer ZN;KY3;6ld2 2793-3407
Zika NS5 polymerase domainmonomer ZN;G8O;G8F;6ld4 2793-3407
Zika NS5 polymerase domainmonomer ZN;G8O;FB2;6ld3 2793-3407
Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethioninemonomer SAM;PO4;CL;5kqr 2523-2786
Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine and 7-methyl-guano…monomer M7G;GOL;ACT;SAM;PO4;5kqs 2525-2786
Structure of the NS5 methyltransferase from Zika bound to MS2042monomer KB1;CL;URE;IPA;NA;5ulp 2525-2786
Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAHmonomer GTP;SAH;PO4;5goz 2524-2785
Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAHmonomer SO4;GTA;SAH;5gp1 2524-2785
Flavivirus NS5 domainmonomer SAM;CL;5njv 2524-2784
Crystal structure of Zika virus NS5 methyltransferasemonomer SAM;SO4;5m5b 2526-2786
Structural basis of Zika virus methyltransferase inhibition by sinefunginmonomer SFG;CL;5mrk 2525-2784
Flavivirus NS5 domainmonomer SAH;MG;5nju 2525-2784