P0DTC9 (NCAP_SARS2) Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)

Nucleoprotein UniProtKBInterProInteractive Modelling

419 aa; Sequence (Fasta) ; 4 identical sequences: Severe acute respiratory syndrome coronavirus 2: A0A6B9VLF5, A0A6C0T6Z7, A0A6V7AMQ7, A0A6V7AN48

Available Structures

84 Experimental Structures

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
Crystal Structure of Human Fab S24-202 in the complex with the N-terminal Domain of Nucleocapsid pr… Heteromer
47-173
100EDO; 12×IOD;PO4;
Structure of the SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2 Heteromer
49-174
100SO4;
Crystal Structure of Human Fab S24-1063 in the Complex with the N-teminal Domain of Nucleocapsid Pr… Heteromer
47-172
100EDO;
Structure of the SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody B6 Heteromer
49-174
100.0
Crystal Structure of Human Fab S24-188 in the complex with the N-teminal Domain of Nucleocapsid pro… Heteromer
47-172
100.0
Complex structure of a human monoclonal antibody with SARS-CoV-2 nucleocapsid protein NTD Heteromer
48-172
100ZN;
Crystal Structure of Human Fab S24-1379 in the Complex with the N-teminal Domain of Nucleocapsid Pr… Heteromer
49-173
100
Crystal structure of the SARS-CoV-2 nucleocapsid protein N-terminal domain in complex with Ubl1 Heteromer
P0DTD1;
49-173
100
Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad C… Heteromer
49-172
100.0
Crystal Structure of Human Fab S24-1564 in the complex with the N-terminal Domain of Nucleocapsid p… Heteromer
49-171
100.0EDO;CL;
Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad C… Heteromer
251-364
100SO4;
Structure of the SARS-CoV-2 N protein C-terminal domain bound to single-domain antibody E2 Heteromer
269-364
100
Structure of SARS-CoV-2 nucleoprotein in dynamic complex with its viral partner nsp3a Heteromer
P0DTD1;
191-263
100
Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protei… Heteromer
Q13283;
12-25
100
Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protein Heteromer
Q13283;
12-22
100
SARS-CoV-2 Nucleocapsid phosphopeptide 201-210 bound to human 14-3-3 sigma Heteromer
P31947;
201-210
100CL;
Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N222-230 Heteromer
P61769; Q861F7;
222-230
100CD;CA;EDO;
Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N316-324 Heteromer
P61769; Q861F7;
316-324
100ACT;CD;NA;
A COVID-19 T-cell response detection method based on a newly identified human CD8+ T cell epitope f… Heteromer
A0A6M6CC39; P61769;
361-369
100
Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N159-167 Heteromer
P61769; Q861F7;
159-167
100
Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N138-146 Heteromer
P61769; Q861F7;
138-146
100CD;ACT;
Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N351-359 Heteromer
P61769; Q861F7;
351-359
1003NI;CL;CD;
Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protei… Heteromer
Q13283;
12-20
88.89
HLA-B*07:02 in complex with SARS-CoV-2 nucleocapsid peptide N105-113 Heteromer
P01889; P61769;
105-113
100CL;
SARS-CoV-2 specific T cell receptor Heteromer
P61769; U5YKE0;
222-230
100
SARS-CoV-2 Nucleocapsid phosphopeptide 193-200 bound to human 14-3-3 sigma Heteromer
P31947;
193-200
100PEG;GOL;BR;TRS;
14-3-3 in complex with SARS-COV2 N phospho-peptide Heteromer
P63104;
194-200
100ACT;GOL;BEZ;
Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N226-234 Heteromer
P61769; Q861F7;
226-228
100CD;NA;ACT;
GQTVTK segment from the Nucleoprotein of SARS-CoV-2, residues 243-248homo-18-mer243-248
100
AALALL segment from the Nucleoprotein of SARS-CoV-2, residues 217-222, crystal form 2homo-18-mer217-222
10036×PG4;
Crystal structure of N-terminal domain of Nucleocapsid protein of SARS-CoV-2homo-16-mer46-175
100GOL;
GSQASS segment from the Nucleoprotein of SARS-CoV-2, residues 179-184homo-16-mer179-184
100
AALALL SEGMENT FROM THE NUCLEOPROTEIN OF SARS-COV-2, RESIDUES 217-222, CRYSTAL FORM 1homo-12-mer217-222
10018×TFA;
Crystal structure of SARS-CoV2 N-NTD complexed with 5-Benzyloxygraminehomo-4-mer46-174
100.0DJU;
Crystal structure of SARS-CoV2 N-NTD complexed with 5-Benzyloxygramine derivative (P3-8)homo-4-mer46-174
100.0U2H;
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant P67Shomo-4-mer48-174
99.21CL;PEG;
Crystal structure of RNA-binding domain of nucleocapsid phosphoprotein from SARS CoV-2, monoclinic …homo-4-mer48-173
100.0ZN;MES;
Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2homo-4-mer49-173
100MES;CL;ZN;GOL;
Crystal structure of SARS-CoV-2 N-NTDhomo-4-mer49-173
100ZN;MES;
SARS-CoV-2 Nucleocapsid dimer structure determined from COVID-19 patientshomo-2-mer1-419
100
Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2,…homo-2-mer247-364
100
Crystal Structure of SARS-CoV-2 N-CTD in complex with GTP (I)homo-2-mer247-364
100
1.45 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosph…homo-2-mer249-364
100
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal RNA binding domainhomo-2-mer250-364
100PEG;
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P21 formhomo-2-mer251-364
100SO4;
Crystal structure of the C-terminal domain of SARS-CoV-2 nucleocapsid proteinhomo-2-mer252-364
100ACT;PEG;
Crystal Structure of SARS-CoV-2 N-CTD in complex with GTP (II)homo-2-mer253-364
100GTP;GOL;
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P1 formhomo-2-mer254-364
100
Crystal structure of SARS-CoV-2 N-CTDhomo-2-mer254-364
100
1.3 Angstrom Resolution Crystal Structure of SARS-CoV-2 Nucleocapsid dimerization domain, pH 8.5homo-2-mer255-364
100
Crystal structure of 2019-nCoV nucleocapsid C-terminal domain (CTD) proteinhomo-2-mer255-364
100
Crystal structure of SARS-CoV-2 N-protein C-terminal domain in complex with riluzolehomo-2-mer256-364
100657;SO4;
Crystal structure of SARS-CoV-2 N-protein C-terminal domain in complex with 2-amino-1,3-benzothiazo…homo-2-mer256-364
100A1H88;SO4;EDO;
Crystal structure of SARS-CoV-2 N-protein C-terminal domain (apo form)homo-2-mer256-364
100GOL;
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain complexed with Chicoric acidhomo-2-mer256-364
100GKP;PEG;GOL;NA;
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domainhomo-2-mer256-364
100GOL;
Crystal structure of SARS-CoV-2 N-CTD in complex with GMPhomo-2-mer256-364
100SCN;5GP;K;CL;
1.6 Angstrom Resolution Crystal Structure of SARS-CoV-2 Nucleocapsid dimerization domain, pH 5.0homo-2-mer257-364
100
2.05 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosph…homo-2-mer257-364
100CL;
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal RNA binding domain at 2.0A resoluti…homo-2-mer257-362
100PO4;CL;
SARS-CoV-2 nucleocapsid protein C-terminal domain (dodecamer)homo-2-mer257-362
100
Crystal structure of SARS-CoV-2 N-CTDhomo-2-mer269-367
100PO4;
Nucleocapsid monomer structure from SARS-CoV-2monomer1-419
100
The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10mer ssRNAmonomer44-180
100
The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoproteinmonomer44-180
100
The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7mer dsRNAmonomer44-180
100
SARS-CoV-2 Nucleocapsid N-terminal domain (N-NTD) proteinmonomer40-174
100
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant S105Imonomer41-174
99.25ZN;
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant P151Smonomer42-174
99.24
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant Q58Imonomer48-177
99.23CD;
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant E136Dmonomer47-174
99.22
Crystal structure of 2019-nCoV nucleocapsid N-terminal domain (NTD) proteinmonomer47-174
100
Crystal structure of the N-terminal domain of SARS-CoV-2 nucleocapsid proteinmonomer47-174
100
Crystal structure of a stem-loop DNA aptamer complexed with SARS-CoV-2 nucleocapsid protein RNA-bin…monomer47-173
100EDO;
Structure of SARS-CoV-2 Nucleocapsid Protein N-Terminal Domainmonomer48-174
100
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant P80Rmonomer48-174
99.14ZN;
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant Y109Amonomer48-174
99.21
Crystal structure of SARS-CoV2 N-NTDmonomer48-174
100.0
Crystal structure of SARS-CoV-2 nucleocapsid protein N-terminal RNA binding domainmonomer48-173
100.0
SARS-CoV-2 Nucleocapsid N-terminal domain NTDmonomer48-172
100
Crystal structure of SARS-CoV-2 N-NTD and dsRNA complexmonomer48-171
100.0EDO;
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant A119Smonomer48-171
99.19
Crystal structure of SARS-Cov-2 nucleocapsid N-terminal domain (NTD) protein,pH8.0monomer49-171
100
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant D63Gmonomer50-171
99.18

3 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
2ofz.1.Amonomer0.7448-173
92.06
4ud1.1.Amonomer0.6840-174
55.41
6wzq.2.Bmonomer0.60250-364
100.00