SMTL ID : 7wkj.1

A COVID-19 T-cell response detection method based on a newly identified human CD8+ T cell epitope from SARS-CoV-2-Hubei Province, 2021.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- THR- PHE- PRO- PRO- THR- GLU- PRO- LYS: LYS-THR-PHE-PRO-PRO-THR-GLU-PRO-LYS(Non-covalent)

LYS-THR-PHE-PRO-PRO-THR-GLU-PRO-LYS.1: 30 residues within 4Å: Chain A: M.5, Y.7, Y.9, E.58, Y.59, Q.62, E.63, N.66, V.67, A.69, Q.70, T.73, D.77, T.80, L.81, Y.84, I.97, Y.99, R.114, D.116, T.143, K.146, W.147, A.150, Q.155, Q.156, Y.159, R.163, W.167, Y.171 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:V.67, A:A.69, A:L.81, A:Y.99, A:W.147, A:Q.156, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:Y.9, A:E.58, A:E.63, A:N.66, A:Q.70, A:Q.70, A:D.77, A:D.77, A:Y.99, A:Y.99, A:D.116, A:T.143, A:Y.159, A:Y.171 Water bridges: A:E.63, A:E.63, A:T.73, A:T.80, A:R.114, A:R.114, A:Q.155 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., A COVID-19 T-Cell Response Detection Method Based on a Newly Identified Human CD8 + T Cell Epitope from SARS-CoV-2 - Hubei Province, China, 2021. China CDC Wkly (2022)

Release Date

2022-03-02

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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