SMTL ID : 7kgr.1

Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N159-167

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- GLN- LEU- PRO- GLN- GLY- THR- THR- LEU: Nucleoprotein(Non-covalent)

LEU-GLN-LEU-PRO-GLN-GLY-THR-THR-LEU.1: 27 residues within 4Å: Chain A: M.5, Y.7, F.9, M.45, Y.59, E.63, K.66, V.67, T.73, V.76, D.77, L.81, Y.84, R.97, Y.99, H.114, Y.116, Y.123, T.143, K.146, W.147, V.152, L.156, Y.159, T.163, W.167, Y.171 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:K.66, A:V.76, A:D.77, A:L.81, A:Y.99, A:Y.116, A:T.143, A:W.147, A:V.152, A:Y.159, A:T.163, A:W.167, A:W.167 Hydrogen bonds: A:E.63, A:E.63, A:K.66, A:V.67, A:D.77, A:Y.84, A:R.97, A:Y.99, A:T.143, A:K.146, A:Y.159, A:Y.171 Water bridges: A:T.73, A:D.77, A:R.97, A:Y.99 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szeto, C. et al., The presentation of SARS-CoV-2 peptides by the common HLA-A * 02:01 molecule. Iscience (2021)

Release Date

2021-01-20

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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