SMTL ID : 1gno.1

HIV-1 PROTEASE (WILD TYPE) COMPLEXED WITH U89360E (INHIBITOR)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x U0E: N-[[1-[N-ACETAMIDYL]-[1-CYCLOHEXYLMETHYL-2-HYDROXY-4-ISOPROPYL]-BUT-4-YL]-CARBONYL]-GLUTAMINYL-ARGINYL-AMIDE(Non-covalent)

U0E.1: 21 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, G.48, G.49 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Ligands: U0E.2 21 PLIP interactions: 16 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:P.81, B:V.82, B:I.84, A:L.23 Hydrogen bonds: B:G.27, B:D.29, B:D.30, B:D.30, B:D.30, B:G.48, B:G.48, B:I.50, A:R.8, A:R.8, A:G.27 Water bridges: B:D.29, B:K.45, B:K.45, A:I.50 U0E.2: 20 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82 Chain B: L.23, D.25, G.27, G.48, G.49, I.50, P.81 Ligands: U0E.1 18 PLIP interactions: 3 interactions with chain B, 15 interactions with chain A Hydrophobic interactions: B:L.23, A:A.28, A:V.32, A:I.50, A:P.81, A:V.82 Hydrogen bonds: B:D.25, B:I.50, A:G.27, A:D.29, A:D.29, A:D.29, A:D.30, A:D.30, A:G.48, A:G.48, A:I.50 Water bridges: A:G.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, L. et al., Crystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases. Biochemistry (1996)

Release Date

1996-11-08

Peptides

HIV-1 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 PROTEASE

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