SMTL ID : 1hvk.1

INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x A79: N-{1-BENZYL-(2S,3S)-2,3-DIHYDROXY-4-[3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRYLAMINO]-5-PHENYL-PENTYL}-3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRAMIDE(Non-covalent)

A79.1: 30 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 25 PLIP interactions: 15 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:V.32, A:I.47, A:I.50, A:P.81, A:P.81, A:V.82, A:I.84, B:I.47, B:I.50, B:P.81, B:V.82 Hydrogen bonds: A:R.8, A:R.8, A:G.27, A:G.27, A:D.29, A:G.48, B:G.27, B:G.27, B:D.29, B:G.48 Water bridges: A:I.50, B:I.50 pi-Cation interactions: A:R.8, B:R.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hosur, M.V. et al., Influence of Stereochemistry on Activity and Binding Modes for C2 Symmetry-Based Diol Inhibitors of HIV-1 Protease. J.Am.Chem.Soc. (1994)

Release Date

1994-04-30

Peptides

HIV-1 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 PROTEASE

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