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SMTL ID : 1c1u.1

RECRUITING ZINC TO MEDIATE POTENT, SPECIFIC INHIBITION OF SERINE PROTEASES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

4 residues within 4Å:

Chain B: H.43, S.205, S.226
Ligands: BAI.3

2 PLIP interactions:

2 interactions with chain B

Metal complexes: B:H.43, B:S.205

1 x NA: SODIUM ION(Non-functional Binders)

NA.2:

6 residues within 4Å:

Chain B: D.232, R.233, D.234, G.235, K.236, Y.237

4 PLIP interactions:

4 interactions with chain B

Hydrogen bonds: B:K.236, B:K.236
Water bridges: B:R.233, B:G.235

1 x BAI: (5-AMIDINO-2-BENZIMIDAZOLYL)(2-BENZIMIDAZOLYL)METHANE(Non-covalent)

BAI.3:

21 residues within 4Å:

Chain B: L.27, C.28, H.43, C.44, W.50, K.52, D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, G.230, C.231, D.232, G.238, F.239
Ligands: ZN.1

10 PLIP interactions:

10 interactions with chain B

Hydrophobic interactions: B:V.225
Hydrogen bonds: B:D.199, B:D.199, B:A.200, B:E.202, B:S.205
Water bridges: B:K.52, B:E.229, B:F.239
pi-Stacking: B:W.50

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Katz, B.A. et al., Design of potent selective zinc-mediated serine protease inhibitors. Nature (1998)

Release Date

2000-07-26

Peptides

ALPHA THROMBIN: A
ALPHA THROMBIN: B
ACETYL HIRUDIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ALPHA THROMBIN

ALPHA THROMBIN

ACETYL HIRUDIN

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