SMTL ID : 1kts.1

Thrombin Inhibitor Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-oligomer

Ligands

1 x C24: 3-({2-[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-3-METHYL-3H-BENZOIMIDAZOLE-5-CARBONYL}-PYRIDIN-2-YL-AMINO)-PROPIONIC ACID ETHYL ESTER(Non-covalent)

C24.1: 21 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, T.177, R.178, I.179, D.199, A.200, C.201, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:V.225, B:W.227, B:W.227, B:E.229 Hydrogen bonds: B:R.178, B:I.179, B:D.199, B:S.205, B:W.227, B:G.228, B:E.229 Water bridges: B:F.239 pi-Stacking: B:W.227, B:W.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hauel, N.H. et al., Structure-based design of novel potent nonpeptide thrombin inhibitors. J.Med.Chem. (2002)

Release Date

2002-02-06

Peptides

thrombin: A
thrombin: B
hirudin IIB: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

thrombin

thrombin

hirudin IIB

Related Entries With Identical Sequence