SMTL ID : 1dwe.1

Crystallographic analysis at 3.0-Angstroms resolution of the binding to human thrombin of four active site-directed inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)

0G6.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, N.95, L.96, I.179, D.199, A.200, C.201, E.202, G.203, S.205, S.226, W.227, G.228, G.230, G.238 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:I.179, B:W.227 Hydrogen bonds: B:A.200, B:E.202, B:G.203, B:D.204, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Water bridges: B:D.199, B:W.227, B:E.229, B:G.230, B:G.230 Salt bridges: B:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banner, D.W. et al., Crystallographic analysis at 3.0-A resolution of the binding to human thrombin of four active site-directed inhibitors. J.Biol.Chem. (1991)

Release Date

1994-01-31

Peptides

ALPHA-THROMBIN light chain: A
ALPHA-THROMBIN heavy chain: B
HIRUDIN IIIA: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

ALPHA-THROMBIN light chain

ALPHA-THROMBIN heavy chain

HIRUDIN IIIA

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