SMTL ID : 1o2g.1

Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain B: D.232, R.233, D.234, G.235, K.236, Y.237 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.235, B:K.236, B:K.236 Water bridges: B:R.233, B:G.238

1 x 696: 3-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-1,1'-BIPHENYL-2-OLATE(Non-covalent)

696.2: 23 residues within 4Å: Chain B: L.27, C.28, H.43, C.44, Y.47, W.50, K.52, F.54, D.199, A.200, C.201, E.202, G.203, D.204, S.205, V.225, W.227, G.228, G.230, C.231, D.232, G.238, F.239 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.50, B:E.202, B:V.225 Hydrogen bonds: B:H.43, B:D.199, B:D.199, B:S.205, B:S.205, B:S.205 Water bridges: B:G.203, B:W.227 pi-Stacking: B:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katz, B.A. et al., Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors. J.Mol.Biol. (2003)

Release Date

2003-05-13

Peptides

THROMBIN: A
THROMBIN: B
ACETYL HIRUDIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

THROMBIN

THROMBIN

ACETYL HIRUDIN

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