SMTL ID : 1ktt.1

Thrombin inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x C02: 4-(5-BENZENESULFONYLAMINO-1-METHYL-1H-BENZOIMIDAZOL-2-YLMETHYL)-BENZAMIDINE(Non-covalent)

C02.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.50, B:L.96, B:L.96, B:I.179, B:V.225 Hydrogen bonds: B:D.199, B:D.199, B:A.200, B:G.228 pi-Stacking: B:W.227, B:W.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hauel, N.H. et al., Structure-based design of novel potent nonpeptide thrombin inhibitors. J.Med.Chem. (2002)

Release Date

2002-02-06

Peptides

thrombin: A
thrombin: B
hirudin IIB: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

thrombin

thrombin

hirudin IIB

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