SMTL ID : 6t4a.1

Thrombin in Complex with a D-Phe-Pro-p-aminopyridine derivative

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.31 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)
1 x J5K: (2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(6-azanylpyridin-3-yl)methyl]pyrrolidine-2-carboxamide(Non-covalent)
1 x PO4: PHOSPHATE ION(Non-functional Binders)
1 x GOL: GLYCEROL(Non-functional Binders)
2 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Ngo, K. et al., Protein-Induced Change in Ligand Protonation during Trypsin and Thrombin Binding: Hint on Differences in Selectivity Determinants of Both Proteins?. J.Med.Chem. (2020)
Release Date
2020-05-13
Peptides
Prothrombin: A
Prothrombin: B
Hirudin variant-2: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H
C
I

Prothrombin

Prothrombin

Hirudin variant-2

Related Entries With Identical Sequence

1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1  more...