SMTL ID : 6xzj.1

Structure of zVDR LBD-Calcitriol in complex with chimera 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ARG- HIS- LYS- ILE- LEU- OUR- UIL- URL- GLN: ARG-HIS-LYS-ILE-LEU-URR-UIL-URL-GLN(Non-covalent)

ARG-HIS-LYS-ILE-LEU-OUR-UIL-URL-GLN.1: 12 residues within 4Å: Chain A: I.119, K.123, R.129, A.133, Q.136, I.137, L.140, K.141, P.291, E.295, E.300, V.301 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.119, A:K.123, A:I.137, A:P.291 Hydrogen bonds: A:R.129, A:E.295, A:E.295, A:E.295

1 x VDX: 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL(Non-covalent)

VDX.2: 17 residues within 4Å: Chain A: Y.24, L.104, L.110, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, H.182, L.186, H.272, Y.276 Ligands: ACT.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.104, A:L.110, A:I.148, A:W.163, A:V.177, A:V.177, A:L.186, A:Y.276 Hydrogen bonds: A:Y.24, A:S.114, A:R.151, A:R.151, A:H.182

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 8 residues within 4Å: Chain A: T.23, Y.24, D.25, Y.28, Y.113, K.117, R.151 Ligands: VDX.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.24, A:Y.28 Hydrogen bonds: A:D.25 Salt bridges: A:K.117, A:R.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cussol, L. et al., Structural Basis for alpha-Helix Mimicry and Inhibition of Protein-Protein Interactions with Oligourea Foldamers. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2021-02-17

Peptides

Vitamin D3 receptor A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor A

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