SMTL ID : 8p9x.1

Vitamin D receptor complex with Xe4Me agonist ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: T.23, Y.24, D.25, Y.28, Y.113, K.117, R.151 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.24, A:Y.28 Hydrogen bonds: A:D.25 Salt bridges: A:K.117, A:R.151

1 x FO6: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{S},3~{a}~{S},7~{a}~{S})-1,7~{a}-dimethyl-1-(5-methyl-5-oxidanyl-hexa-1,3-diynyl)-2,3,3~{a},5,6,7-hexahydroinden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol(Non-covalent)

FO6.2: 17 residues within 4Å: Chain A: Y.24, L.104, L.107, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, H.182, L.190, H.272, Y.276, L.279 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.104, A:L.107, A:I.148, A:W.163, A:V.177, A:V.177, A:L.190, A:L.279 Hydrogen bonds: A:Y.24, A:Y.24, A:S.114, A:R.151, A:S.155, A:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Len-Tayon, K. et al., A vitamin D-based strategy overcomes chemoresistance in prostate cancer. Br.J.Pharmacol. (2024)

Release Date

2024-06-26

Peptides

Vitamin D3 receptor A: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vitamin D3 receptor A

Nuclear receptor coactivator 2

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