SMTL ID : 8pwf.1

crystal structure of VDR in complex with Des-C-Ring and Aromatic-D-Ring analog 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FVB: (1R,3S,5Z)-4-methylidene-5-[(E)-3-[3-[7,7,7-tris(fluoranyl)-6-oxidanyl-6-(trifluoromethyl)heptyl]phenyl]pent-2-enylidene]cyclohexane-1,3-diol(Non-covalent)

FVB.1: 26 residues within 4Å: Chain A: Y.24, Y.28, L.104, L.107, A.108, L.110, V.111, S.114, I.148, M.149, R.151, S.152, S.155, W.163, C.165, Y.172, V.177, A.180, H.182, L.190, H.272, Y.276, L.279, L.289, V.293, F.297 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.110, A:V.111, A:I.148, A:W.163, A:Y.172, A:V.177, A:L.190 Hydrogen bonds: A:Y.24, A:Y.28, A:R.151, A:S.155, A:H.182 Halogen bonds: A:A.180 FVB.2: 26 residues within 4Å: Chain C: Y.24, Y.28, L.104, L.107, A.108, L.110, V.111, S.114, I.148, M.149, R.151, S.152, S.155, W.163, C.165, Y.172, V.177, A.180, H.182, L.190, H.272, Y.276, L.279, L.289, V.293, F.297 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.24, C:L.110, C:V.111, C:I.148, C:W.163, C:Y.172, C:V.177, C:L.190 Hydrogen bonds: C:R.151, C:S.155, C:H.182 Halogen bonds: C:A.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rochel, N., Novel Des-C-Ring and Aromatic-D-Ring analogs Acting as Potent Agonists of the Vitamin D Receptor (VDR). To Be Published

Release Date

2024-08-14

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 2

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