SMTL ID : 2iku.1

Crystal Structure of Human Renin Complexed with Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

6 x LIY: 6-ETHYL-5-[(2S)-1-(3-METHOXYPROPYL)-2-PHENYL-1,2,3,4-TETRAHYDROQUINOLIN-7-YL]PYRIMIDINE-2,4-DIAMINE(Non-covalent)

LIY.1: 19 residues within 4Å: Chain A: T.18, Q.19, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, T.227, G.228, A.229, S.230 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.36, A:Y.83, A:Y.83, A:Y.83, A:P.118, A:F.119, A:L.121, A:A.122, A:F.124, A:V.127 Hydrogen bonds: A:G.40, A:T.85, A:T.85 Salt bridges: A:D.38, A:D.226 LIY.2: 20 residues within 4Å: Chain B: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, T.227, G.228, S.230 Chain F: N.260 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Q.19, B:V.36, B:Y.83, B:P.118, B:F.119, B:L.121, B:A.122, B:F.124, B:V.127 Hydrogen bonds: B:Y.20, B:G.40, B:S.84, B:T.85 Salt bridges: B:D.38, B:D.226 LIY.3: 19 residues within 4Å: Chain C: T.18, Q.19, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, T.227, G.228, A.229, S.230 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:V.36, C:Y.83, C:Y.83, C:Y.83, C:P.118, C:F.119, C:L.121, C:A.122, C:F.124, C:V.127 Hydrogen bonds: C:G.40, C:T.85, C:T.85 Salt bridges: C:D.38, C:D.226 LIY.4: 20 residues within 4Å: Chain B: N.260 Chain D: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, T.227, G.228, S.230 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:Q.19, D:V.36, D:Y.83, D:P.118, D:F.119, D:L.121, D:A.122, D:F.124, D:V.127 Hydrogen bonds: D:Y.20, D:G.40, D:T.85, D:T.85 Salt bridges: D:D.38, D:D.226 LIY.5: 19 residues within 4Å: Chain E: T.18, Q.19, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, T.227, G.228, A.229, S.230 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:V.36, E:Y.83, E:Y.83, E:Y.83, E:P.118, E:F.119, E:L.121, E:A.122, E:F.124, E:V.127 Hydrogen bonds: E:G.40, E:S.84, E:T.85 Salt bridges: E:D.38, E:D.226 LIY.6: 20 residues within 4Å: Chain D: N.260 Chain F: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, T.227, G.228, S.230 15 PLIP interactions: 15 interactions with chain F Hydrophobic interactions: F:Q.19, F:V.36, F:Y.83, F:P.118, F:F.119, F:L.121, F:A.122, F:F.124, F:V.127 Hydrogen bonds: F:Y.20, F:G.40, F:S.84, F:T.85 Salt bridges: F:D.38, F:D.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarver, R.W. et al., Binding thermodynamics of substituted diaminopyrimidine renin inhibitors. Anal.Biochem. (2007)

Release Date

2006-12-05

Peptides

Renin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Renin

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