SMTL ID : 2il2.1

Crystal Structure of Human Renin Complexed with Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-hexamer

Ligands

6 x LIX: N-[2-({2-AMINO-6-ETHYL-5-[4-(3-METHOXYPROPYL)-2,2-DIMETHYL-3-OXO-3,4-DIHYDRO-2H-1,4-BENZOXAZIN-6-YL]PYRIMIDIN-4-YL}AMINO)ETHYL]NAPHTHALENE-2-SULFONAMIDE(Non-covalent)

LIX.1: 24 residues within 4Å: Chain A: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Y.162, D.226, T.227, G.228, A.229, S.230, F.253, H.301 Chain C: Y.60 Ligands: CIT.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.36, A:Y.83, A:F.124, A:V.127, A:F.253 Hydrogen bonds: A:Q.19, A:Y.20, A:G.40, A:T.85, A:T.85, A:S.230 Water bridges: A:S.84 Salt bridges: A:D.38, A:D.226 pi-Cation interactions: A:H.301 LIX.3: 25 residues within 4Å: Chain B: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, Y.162, D.226, T.227, G.228, A.229, S.230, Y.231, H.301, A.302, M.303 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:V.36, B:Y.83, B:Y.83, B:P.118, B:P.118, B:F.119, B:L.121, B:F.124, B:V.127, B:Y.231, B:Y.231, B:H.301 Hydrogen bonds: B:Y.20, B:G.40, B:T.85, B:S.230, B:Y.231 Water bridges: B:Q.19, B:S.230, B:S.230, B:S.233 Salt bridges: B:D.38, B:D.226 pi-Cation interactions: B:H.301 LIX.4: 24 residues within 4Å: Chain C: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Y.162, D.226, T.227, G.228, A.229, S.230, F.253, H.301 Chain E: Y.60 Ligands: CIT.5 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:V.36, C:Y.83, C:F.124, C:V.127, C:F.253 Hydrogen bonds: C:Q.19, C:Y.20, C:G.40, C:T.85, C:T.85, C:S.230 Water bridges: C:S.84 Salt bridges: C:D.38, C:D.226 pi-Cation interactions: C:H.301 LIX.6: 25 residues within 4Å: Chain D: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, Y.162, D.226, T.227, G.228, A.229, S.230, Y.231, H.301, A.302, M.303 24 PLIP interactions: 24 interactions with chain D Hydrophobic interactions: D:V.36, D:Y.83, D:Y.83, D:P.118, D:P.118, D:F.119, D:L.121, D:F.124, D:V.127, D:Y.231, D:Y.231, D:H.301 Hydrogen bonds: D:Y.20, D:G.40, D:T.85, D:S.230, D:Y.231 Water bridges: D:Q.19, D:S.230, D:S.230, D:S.233 Salt bridges: D:D.38, D:D.226 pi-Cation interactions: D:H.301 LIX.7: 24 residues within 4Å: Chain A: Y.60 Chain E: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Y.162, D.226, T.227, G.228, A.229, S.230, F.253, H.301 Ligands: CIT.8 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:V.36, E:Y.83, E:F.124, E:V.127, E:F.253 Hydrogen bonds: E:Q.19, E:Y.20, E:G.40, E:T.85, E:T.85, E:S.230 Water bridges: E:S.84 Salt bridges: E:D.38, E:D.226 pi-Cation interactions: E:H.301 LIX.9: 25 residues within 4Å: Chain F: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, Y.162, D.226, T.227, G.228, A.229, S.230, Y.231, H.301, A.302, M.303 24 PLIP interactions: 24 interactions with chain F Hydrophobic interactions: F:V.36, F:Y.83, F:Y.83, F:P.118, F:P.118, F:F.119, F:L.121, F:F.124, F:V.127, F:Y.231, F:Y.231, F:H.301 Hydrogen bonds: F:Y.20, F:G.40, F:T.85, F:S.230, F:Y.231 Water bridges: F:Q.19, F:S.230, F:S.230, F:S.233 Salt bridges: F:D.38, F:D.226 pi-Cation interactions: F:H.301

3 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 3 residues within 4Å: Chain A: L.121, F.253 Ligands: LIX.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.253, A:F.253 CIT.5: 3 residues within 4Å: Chain C: L.121, F.253 Ligands: LIX.4 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.253, C:F.253 Water bridges: C:D.254 CIT.8: 3 residues within 4Å: Chain E: L.121, F.253 Ligands: LIX.7 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.253, E:F.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarver, R.W. et al., Binding thermodynamics of substituted diaminopyrimidine renin inhibitors. Anal.Biochem. (2007)

Release Date

2006-12-05

Peptides

Renin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Renin

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