SMTL ID : 9ff8.1

Human transthyretin (TTR) in complex with (E)-2-((((2-chlorobenzyl)oxy)imino)methyl)benzoic acid (Lic166)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: E.62 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain A: K.70, H.90, E.92 Chain B: W.41 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:E.92 Water bridges: A:K.70, A:K.70, A:K.70, A:K.70

2 x 01: 2-[(2-chlorophenyl)methoxyiminomethyl]benzoic acid

01.3: 6 residues within 4Å: Chain A: K.15, T.106, A.108, L.110, S.117, V.121 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.106, A:A.108, A:L.110, A:V.121 Salt bridges: A:K.15 01.5: 5 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.15, B:A.108, B:L.110 pi-Cation interactions: B:K.15

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain B: R.21, I.26, N.27, Y.78, A.81, L.82 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.21, B:N.27 Water bridges: B:I.26, B:Y.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ciccone, L. et al., Human transthyretin (TTR) in complex with (E)-2-((((2-chlorobenzyl)oxy)imino)methyl)benzoic acid (Lic166). To Be Published

Release Date

2025-06-04

Peptides

Transthyretin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transthyretin

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