SMTL ID : 3irx.1

Crystal Structure of HIV-1 reverse transcriptase (RT) in complex with the Non-nucleoside RT Inhibitor (E)-S-Methyl 5-(1-(3,7-Dimethyl-2-oxo-2,3-dihydrobenzo[d]oxazol-5-yl)-5-(5-methyl-1,3,4-oxadiazol-2-yl)pent-1-enyl)-2-methoxy-3-methylbenzothioate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UDR: (E)-S-Methyl 5-(1-(3,7-Dimethyl-2-oxo-2,3-dihydrobenzo[d]oxazol-5-yl)-5-(5-methyl-1,3,4-oxadiazol-2-yl)pent-1-enyl)-2-methoxy-3-methy lbenzothioate(Non-covalent)

UDR.1: 16 residues within 4Å: Chain A: P.98, L.103, K.104, K.106, V.109, V.111, Y.184, Y.191, V.192, G.193, F.230, L.231, W.232, L.237, H.238, Y.321 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.103, A:Y.184, A:Y.184, A:Y.191, A:Y.191, A:Y.191, A:F.230, A:W.232, A:L.237, A:L.237 pi-Stacking: A:Y.184, A:F.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cullen, M.D. et al., Crystal Structure of HIV-1 reverse transcriptase (RT) in complex with thealkenyldiarylmethane (ADAM) Non-nucleoside RT Inhibitor (E)-S-Methyl 5-(1-(3,7-Dimethyl-2-oxo-2,3-dihydrobenzo[d]oxazol-5-yl)-5-(5-methyl-1,3,4-oxadiazol-2-yl)pent-1-enyl)-2-methoxy-3-methylbenzothioate. J.Med.Chem. (2009)

Release Date

2010-04-07

Peptides

Reverse transcriptase/ribonuclease H: A
Reverse transcriptase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

Reverse transcriptase

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