- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
CO3.2: 7 residues within 4Å:- Chain A: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.378, A:G.379, A:R.380, A:R.380, A:R.380
CO3.10: 8 residues within 4Å:- Chain B: K.291, D.376, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.9
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.378, B:G.379, B:R.380, B:R.380, B:R.380
CO3.17: 8 residues within 4Å:- Chain C: K.291, D.376, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.16
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.377, C:G.379, C:R.380, C:L.404
CO3.25: 8 residues within 4Å:- Chain D: K.291, D.376, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.24
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:K.291, D:A.377, D:G.379, D:R.380, D:L.404
CO3.36: 8 residues within 4Å:- Chain E: K.291, D.376, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.35
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:E.378, E:G.379, E:R.380, E:R.380, E:R.380
CO3.45: 7 residues within 4Å:- Chain F: K.291, D.376, A.377, E.378, G.379, R.380, L.404
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:A.377, F:G.379, F:R.380, F:L.404
- 11 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: I.18, E.19, Y.20, N.21
- Ligands: 1PE.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.20, A:N.21, A:N.21
SO4.4: 5 residues within 4Å:- Chain A: E.42, G.43, L.136, S.137
- Chain D: K.81
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain A- Water bridges: D:K.81, D:K.81
- Salt bridges: D:K.81
- Hydrogen bonds: A:G.43, A:S.137
SO4.11: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
6 PLIP interactions:2 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: A:K.353, C:K.353, B:K.353
- Salt bridges: A:K.353, C:K.353, B:K.353
SO4.12: 6 residues within 4Å:- Chain B: E.42, G.43, K.135, L.136, S.137, K.138
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.42, B:G.43, B:K.135, B:S.137, B:K.138
SO4.18: 6 residues within 4Å:- Chain C: I.446, I.447, N.448, E.449
- Chain D: S.116, Y.416
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:N.448, C:N.448, C:E.449, D:S.116
- Water bridges: D:S.415, D:Y.416
SO4.19: 5 residues within 4Å:- Chain C: G.43, K.135, L.136, S.137
- Chain E: K.81
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain E- Hydrogen bonds: C:G.43, C:S.137, C:S.137
- Salt bridges: E:K.81
SO4.20: 4 residues within 4Å:- Chain C: N.422, N.423, T.486, A.487
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.422, C:N.423
- Water bridges: C:A.487
SO4.26: 4 residues within 4Å:- Chain D: I.18, E.19, Y.20, N.21
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.20, D:N.21, D:N.21
SO4.27: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:1 interactions with chain F, 2 interactions with chain E, 3 interactions with chain D- Hydrogen bonds: F:K.353, E:K.353, D:S.352, D:K.353
- Salt bridges: E:K.353, D:K.353
SO4.28: 3 residues within 4Å:- Chain D: N.462, S.466
- Chain E: R.503
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:N.462
- Water bridges: D:K.457, D:S.466
- Salt bridges: E:R.503
SO4.37: 4 residues within 4Å:- Chain E: N.422, N.423, T.486, A.487
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:N.422, E:N.422, E:N.423
- 24 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.5: 6 residues within 4Å:- Chain A: Y.20, N.21, H.25, K.237, Y.328
- Ligands: 1PE.6
Ligand excluded by PLIP1PE.6: 5 residues within 4Å:- Chain A: Y.20, E.233, K.237
- Ligands: SO4.3, 1PE.5
Ligand excluded by PLIP1PE.7: 7 residues within 4Å:- Chain A: G.307, M.309, M.313, F.315, T.403, G.406, A.494
Ligand excluded by PLIP1PE.8: 4 residues within 4Å:- Chain A: N.366, K.368, D.460
- Chain B: S.171
Ligand excluded by PLIP1PE.15: 7 residues within 4Å:- Chain B: G.307, M.309, M.313, F.315, G.406, L.409, A.494
Ligand excluded by PLIP1PE.21: 5 residues within 4Å:- Chain C: Y.20, N.21, E.233, K.237
- Ligands: 1PE.22
Ligand excluded by PLIP1PE.22: 6 residues within 4Å:- Chain C: Y.20, N.21, H.25, K.237, Y.328
- Ligands: 1PE.21
Ligand excluded by PLIP1PE.23: 8 residues within 4Å:- Chain C: G.307, M.309, M.313, F.315, T.403, G.406, L.409, A.494
Ligand excluded by PLIP1PE.29: 6 residues within 4Å:- Chain D: Y.20, N.21, H.25, F.206, K.237, Y.328
Ligand excluded by PLIP1PE.30: 6 residues within 4Å:- Chain D: H.25, D.26, I.27, K.28, E.199, R.202
Ligand excluded by PLIP1PE.31: 7 residues within 4Å:- Chain D: K.303, G.307, M.309, M.313, L.404, G.406, A.494
Ligand excluded by PLIP1PE.32: 6 residues within 4Å:- Chain D: Y.416, S.434, K.435, P.440, V.441, W.442
Ligand excluded by PLIP1PE.33: 7 residues within 4Å:- Chain D: N.366, K.368, R.451, D.460, E.481, Q.484
- Chain E: S.171
Ligand excluded by PLIP1PE.34: 9 residues within 4Å:- Chain A: F.73, N.78, K.81, F.82
- Chain D: Y.93, M.94, F.95, S.101, V.102
Ligand excluded by PLIP1PE.38: 4 residues within 4Å:- Chain E: Y.20, E.233, Q.236, K.237
Ligand excluded by PLIP1PE.39: 6 residues within 4Å:- Chain E: Y.20, H.25, F.206, K.237, L.238, Y.328
Ligand excluded by PLIP1PE.40: 8 residues within 4Å:- Chain E: G.307, M.309, M.313, F.315, T.403, G.406, L.409, A.494
Ligand excluded by PLIP1PE.41: 5 residues within 4Å:- Chain E: Y.416, S.434, K.435, V.441, W.442
Ligand excluded by PLIP1PE.42: 5 residues within 4Å:- Chain E: K.368, R.451, D.460, E.481
- Chain F: S.171
Ligand excluded by PLIP1PE.43: 7 residues within 4Å:- Chain E: L.131, H.132, N.134, T.165, E.167, E.179, Y.180
Ligand excluded by PLIP1PE.46: 6 residues within 4Å:- Chain F: Y.20, N.21, H.25, F.206, K.237, Y.328
Ligand excluded by PLIP1PE.47: 3 residues within 4Å:- Chain F: Y.20, E.233, K.237
Ligand excluded by PLIP1PE.48: 5 residues within 4Å:- Chain D: S.171
- Chain F: N.366, K.368, D.460, Q.484
Ligand excluded by PLIP1PE.49: 3 residues within 4Å:- Chain A: W.443
- Chain F: S.434, V.441
Ligand excluded by PLIP- 3 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
2PE.13: 3 residues within 4Å:- Chain B: Y.20, N.21
- Ligands: 2PE.14
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.21
2PE.14: 6 residues within 4Å:- Chain B: Y.20, N.21, H.25, K.237, Y.328
- Ligands: 2PE.13
No protein-ligand interaction detected (PLIP)2PE.50: 5 residues within 4Å:- Chain F: M.309, M.313, T.403, G.406, A.494
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 24 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 3 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F