- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
CO3.2: 7 residues within 4Å:- Chain A: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.291, A:G.379, A:R.380, A:L.404
CO3.8: 8 residues within 4Å:- Chain B: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.7, R5X.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.379, B:R.380, B:R.380, B:R.380
CO3.14: 8 residues within 4Å:- Chain C: K.291, A.377, E.378, G.379, R.380, L.404, T.405
- Ligands: R5X.16
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.377, C:G.379, C:R.380, C:L.404
CO3.18: 7 residues within 4Å:- Chain D: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.20
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.380, D:R.380, D:L.404
CO3.22: 7 residues within 4Å:- Chain E: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.24
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.379, E:R.380, E:L.404
CO3.30: 8 residues within 4Å:- Chain F: K.291, A.377, E.378, G.379, R.380, L.404, T.405
- Ligands: R5X.32
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:R.380, F:R.380, F:L.404
- 6 x R5X: 3-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
R5X.4: 19 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.1, CO3.2, ZN.3
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.409, A:A.494
- Hydrogen bonds: A:K.291, A:K.303, A:D.376, A:E.378, A:G.379, A:L.404, A:G.406
- Water bridges: A:S.471
R5X.10: 16 residues within 4Å:- Chain B: K.291, D.296, K.303, F.315, D.316, N.374, D.376, E.378, G.379, L.404, T.405, G.406, A.494
- Ligands: ZN.7, CO3.8, ZN.9
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.315
- Hydrogen bonds: B:K.303, B:D.376, B:E.378, B:G.379, B:R.380, B:L.404, B:G.406
- Water bridges: B:S.471
R5X.16: 18 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, S.471, A.494
- Ligands: ZN.13, CO3.14, ZN.15
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:F.315
- Hydrogen bonds: C:K.291, C:D.296, C:K.303, C:D.376, C:E.378, C:G.379, C:L.404, C:G.406, C:S.471
R5X.20: 18 residues within 4Å:- Chain D: K.291, D.296, K.303, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.17, CO3.18, ZN.19
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:F.315, D:L.409, D:A.494
- Hydrogen bonds: D:K.303, D:D.376, D:E.378, D:G.379, D:L.404, D:G.406, D:S.471, D:S.471
- Water bridges: D:R.380
R5X.24: 16 residues within 4Å:- Chain E: K.291, D.296, K.303, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409
- Ligands: ZN.21, CO3.22, ZN.23
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:L.409
- Hydrogen bonds: E:K.303, E:D.376, E:E.378, E:G.379, E:L.404, E:G.406
R5X.32: 19 residues within 4Å:- Chain F: K.291, D.296, K.303, M.309, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.29, CO3.30, ZN.31
11 PLIP interactions:11 interactions with chain F- Hydrophobic interactions: F:L.409, F:A.494
- Hydrogen bonds: F:K.291, F:K.303, F:D.376, F:E.378, F:G.379, F:L.404, F:G.406, F:S.471, F:S.471
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
8 PLIP interactions:3 interactions with chain B, 3 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: B:S.352, B:K.353, C:S.352, C:K.353, A:K.353
- Salt bridges: B:K.353, C:K.353, A:K.353
SO4.6: 7 residues within 4Å:- Chain A: Y.161, D.166, Y.209, S.212, A.216, K.504
- Chain C: Y.458
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.166, A:D.166, A:Y.209, A:S.212, A:P.505
SO4.25: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: D:K.353, E:K.353, F:K.353
- Salt bridges: D:K.353, E:K.353, F:K.353
SO4.28: 3 residues within 4Å:- Chain E: E.19, Y.20, N.21
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:Y.20, E:N.21
SO4.36: 5 residues within 4Å:- Chain F: I.18, E.19, Y.20, N.21
- Ligands: 1PE.33
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Y.20, F:N.21, F:N.21
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.11: 4 residues within 4Å:- Chain B: Y.20, E.233, K.237
- Ligands: 1PE.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.237
1PE.12: 6 residues within 4Å:- Chain B: Y.20, H.25, F.206, K.237, Y.328
- Ligands: 1PE.11
No protein-ligand interaction detected (PLIP)1PE.26: 7 residues within 4Å:- Chain E: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
No protein-ligand interaction detected (PLIP)1PE.27: 2 residues within 4Å:- Chain E: E.425, N.428
No protein-ligand interaction detected (PLIP)1PE.33: 4 residues within 4Å:- Chain F: Y.20, E.233, K.237
- Ligands: SO4.36
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:K.237
1PE.34: 7 residues within 4Å:- Chain F: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
1 PLIP interactions:1 interactions with chain F- Water bridges: F:T.332
1PE.35: 6 residues within 4Å:- Chain F: Q.7, S.10, L.11, D.12, P.13, T.14
1 PLIP interactions:1 interactions with chain F- Water bridges: F:T.14
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 family aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 6 x R5X: 3-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 family aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F