- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
CO3.2: 7 residues within 4Å:- Chain A: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5T.6
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.291, A:A.377, A:G.379, A:R.380, A:L.404
CO3.11: 7 residues within 4Å:- Chain B: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5T.14
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.380, B:R.380, B:R.380
CO3.16: 7 residues within 4Å:- Chain C: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5T.18
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.379, C:R.380, C:L.404
CO3.22: 7 residues within 4Å:- Chain D: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5T.24
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.380, D:R.380, D:L.404
CO3.30: 6 residues within 4Å:- Chain E: K.291, A.377, G.379, R.380, L.404
- Ligands: R5T.35
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.379, E:R.380, E:L.404
CO3.38: 7 residues within 4Å:- Chain F: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5T.42
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:R.380, F:R.380, F:L.404
- 11 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: G.307, S.308, M.309, D.311
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.307, A:S.308, A:M.309
SO4.5: 9 residues within 4Å:- Chain A: F.73, N.78, K.81, F.82, F.92
- Chain D: Y.93, M.94, F.95, S.101
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:N.78, D:M.94
- Salt bridges: A:K.81
SO4.13: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
7 PLIP interactions:1 interactions with chain A, 3 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: A:K.353, B:S.352, B:K.353, C:S.352, C:K.353
- Salt bridges: B:K.353, C:K.353
SO4.27: 3 residues within 4Å:- Chain D: N.462, S.466
- Chain E: R.503
7 PLIP interactions:5 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: D:N.462, D:S.466
- Water bridges: D:T.453, D:K.457, D:I.464, E:R.503
- Salt bridges: E:R.503
SO4.28: 6 residues within 4Å:- Chain C: S.467, K.469
- Chain D: M.309, L.409, T.414, F.500
No protein-ligand interaction detected (PLIP)SO4.32: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:2 interactions with chain E, 3 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: E:K.353, D:S.352, D:K.353, F:K.353
- Salt bridges: E:K.353, D:K.353
SO4.33: 4 residues within 4Å:- Chain E: P.306, G.307, S.308, M.309
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.307, E:G.307, E:M.309
SO4.34: 4 residues within 4Å:- Chain E: I.18, E.19, Y.20, N.21
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:Y.20, E:N.21
SO4.40: 3 residues within 4Å:- Chain F: I.18, Y.20, N.21
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:I.18, F:Y.20, F:N.21, F:N.21
SO4.41: 4 residues within 4Å:- Chain F: G.307, S.308, M.309, I.310
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:G.307, F:S.308, F:M.309, F:I.310
- Water bridges: F:S.308
SO4.44: 4 residues within 4Å:- Chain A: W.442, W.443
- Chain F: W.442, W.443
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:W.442, F:W.443
- 6 x R5T: tert-butyl {(1S)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}carbamate(Non-covalent)
R5T.6: 18 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, M.313, F.315, D.376, E.378, R.380, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.1, CO3.2, ZN.3
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.409
- Hydrogen bonds: A:K.303, A:L.404, A:L.404
- Water bridges: A:D.376
- pi-Stacking: A:F.315
R5T.14: 14 residues within 4Å:- Chain B: K.291, D.296, K.303, D.376, E.378, R.380, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.10, CO3.11, ZN.12
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.409, B:A.494
- Hydrogen bonds: B:K.303, B:G.379, B:L.404, B:L.404
- Water bridges: B:G.406
- pi-Stacking: B:F.315
R5T.18: 19 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, F.315, D.376, A.377, E.378, G.379, R.380, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.15, CO3.16, ZN.17
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:A.377, C:L.409
- Hydrogen bonds: C:K.291, C:K.303, C:E.378, C:E.378, C:G.379, C:L.404
R5T.24: 18 residues within 4Å:- Chain D: K.291, D.296, K.303, M.309, M.313, F.315, D.376, A.377, E.378, R.380, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.21, CO3.22, ZN.23
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:A.377, D:L.409
- Hydrogen bonds: D:K.291, D:K.303, D:L.404, D:L.404
- Water bridges: D:S.471
- pi-Stacking: D:F.315
R5T.35: 17 residues within 4Å:- Chain E: K.291, D.296, K.303, M.309, D.376, E.378, G.379, R.380, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.29, CO3.30, ZN.31
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:L.409
- Hydrogen bonds: E:K.291, E:K.303, E:D.316, E:G.379, E:L.404, E:L.404, E:G.406
R5T.42: 15 residues within 4Å:- Chain F: K.291, D.296, K.303, F.315, D.376, E.378, G.379, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.37, CO3.38, ZN.39
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:F.315
- Hydrogen bonds: F:K.291, F:K.303, F:G.379, F:L.404, F:L.404
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.7: 4 residues within 4Å:- Chain A: G.37, N.39, N.66, Y.187
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.187
- Hydrogen bonds: A:N.39
1PE.8: 5 residues within 4Å:- Chain A: Y.20, H.25, K.237, L.238, Y.328
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.238, A:Y.328
- Hydrogen bonds: A:Y.328
1PE.19: 5 residues within 4Å:- Chain C: Y.20, N.21, E.233, K.237
- Ligands: 1PE.20
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:E.233
- Hydrogen bonds: C:K.237
1PE.20: 7 residues within 4Å:- Chain C: Y.20, N.21, H.25, F.206, K.237, Y.328
- Ligands: 1PE.19
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.237
1PE.25: 5 residues within 4Å:- Chain D: Y.20, N.21, H.25, K.237, Y.328
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.21, D:H.25
1PE.26: 4 residues within 4Å:- Chain D: Y.20, N.21, E.233, K.237
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.233, D:K.237
1PE.36: 5 residues within 4Å:- Chain E: Y.20, H.25, F.206, K.237, Y.328
No protein-ligand interaction detected (PLIP)1PE.43: 7 residues within 4Å:- Chain F: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:L.238
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 6 x R5T: tert-butyl {(1S)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}carbamate(Non-covalent)
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L