- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.39 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 12 x ZN: ZINC ION(Non-covalent)
ZN.2: 7 residues within 4Å:- Chain A: K.291, D.296, D.316, E.378
- Ligands: CO3.1, ZN.3, 1PE.7
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.296, A:D.316, A:E.378
ZN.3: 6 residues within 4Å:- Chain A: D.296, K.303, D.376, E.378
- Ligands: CO3.1, ZN.2
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.296, A:D.376, A:D.376, A:E.378
ZN.13: 6 residues within 4Å:- Chain B: K.291, D.296, D.316, E.378
- Ligands: CO3.12, ZN.14
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.296, B:D.316, B:E.378
ZN.14: 5 residues within 4Å:- Chain B: D.296, K.303, D.376, E.378
- Ligands: ZN.13
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.296, B:D.376, B:D.376, B:E.378
ZN.19: 6 residues within 4Å:- Chain C: K.291, D.296, D.316, E.378
- Ligands: CO3.18, ZN.20
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.296, C:D.316, C:E.378
ZN.20: 4 residues within 4Å:- Chain C: D.296, D.376, E.378
- Ligands: ZN.19
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.296, C:D.376, C:D.376, C:E.378
ZN.28: 7 residues within 4Å:- Chain D: K.291, D.296, D.316, E.378
- Ligands: CO3.27, ZN.29, 1PE.33
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.296, D:D.316, D:E.378
ZN.29: 7 residues within 4Å:- Chain D: D.296, K.303, D.376, E.378
- Ligands: CO3.27, ZN.28, 1PE.33
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.296, D:D.376, D:D.376, D:E.378
ZN.38: 6 residues within 4Å:- Chain E: K.291, D.296, D.316, E.378
- Ligands: CO3.37, ZN.39
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:D.296, E:D.316, E:E.378
ZN.39: 4 residues within 4Å:- Chain E: D.296, D.376, E.378
- Ligands: ZN.38
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.296, E:D.376, E:D.376, E:E.378
ZN.53: 6 residues within 4Å:- Chain F: D.296, K.303, D.376, E.378
- Ligands: CO3.52, ZN.54
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.296, F:D.376, F:D.376, F:E.378
ZN.54: 6 residues within 4Å:- Chain F: K.291, D.296, D.316, E.378
- Ligands: CO3.52, ZN.53
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:D.296, F:D.316, F:E.378
- 11 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: R.503
- Chain C: N.455, N.462, S.466
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:N.462, C:S.466
- Water bridges: C:E.371, C:K.457, C:S.466, C:S.466
- Salt bridges: A:R.503
SO4.5: 5 residues within 4Å:- Chain A: I.18, E.19, Y.20, N.21
- Ligands: 1PE.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.20, A:N.21, A:N.21
SO4.15: 4 residues within 4Å:- Chain B: P.306, G.307, S.308, M.309
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.307, B:S.308, B:M.309
SO4.21: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
6 PLIP interactions:2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: C:K.353, B:K.353, A:K.353
- Salt bridges: C:K.353, B:K.353, A:K.353
SO4.22: 5 residues within 4Å:- Chain C: I.18, E.19, Y.20, N.21
- Ligands: 1PE.23
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.20, C:N.21
SO4.30: 5 residues within 4Å:- Chain D: I.18, E.19, Y.20, N.21
- Ligands: 1PE.32
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.20, D:N.21
SO4.40: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:2 interactions with chain D, 2 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: D:K.353, F:K.353, E:K.353
- Salt bridges: D:K.353, F:K.353, E:K.353
SO4.41: 4 residues within 4Å:- Chain E: I.18, Y.20, N.21
- Ligands: 1PE.46
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:I.18, E:Y.20, E:N.21
SO4.42: 3 residues within 4Å:- Chain D: N.462, S.466
- Chain E: R.503
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: D:N.455, D:N.462, D:S.466
- Water bridges: D:K.457, E:R.503
- Salt bridges: E:R.503
SO4.43: 3 residues within 4Å:- Chain E: N.462, S.466
- Chain F: R.503
7 PLIP interactions:2 interactions with chain F, 5 interactions with chain E- Water bridges: F:R.503
- Salt bridges: F:R.503
- Hydrogen bonds: E:N.462, E:N.462, E:S.466, E:S.466, E:S.466
SO4.44: 4 residues within 4Å:- Chain E: P.306, G.307, S.308, M.309
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.307, E:M.309
- Water bridges: E:I.310
- 29 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.6: 7 residues within 4Å:- Chain A: Y.20, N.21, H.25, F.206, K.237, Y.328
- Ligands: 1PE.11
Ligand excluded by PLIP1PE.7: 9 residues within 4Å:- Chain A: K.303, G.307, M.309, M.313, D.316, T.403, G.406, L.409
- Ligands: ZN.2
Ligand excluded by PLIP1PE.8: 5 residues within 4Å:- Chain A: W.442, W.443
- Chain F: L.431, W.442, W.443
Ligand excluded by PLIP1PE.9: 5 residues within 4Å:- Chain A: Y.32, N.39, E.41, Y.187
- Ligands: 1PE.10
Ligand excluded by PLIP1PE.10: 3 residues within 4Å:- Chain A: G.37, N.39
- Ligands: 1PE.9
Ligand excluded by PLIP1PE.11: 5 residues within 4Å:- Chain A: Y.20, E.233, K.237
- Ligands: SO4.5, 1PE.6
Ligand excluded by PLIP1PE.17: 4 residues within 4Å:- Chain B: G.307, M.309, M.313, G.406
Ligand excluded by PLIP1PE.23: 6 residues within 4Å:- Chain C: Y.20, N.21, E.233, K.237
- Ligands: SO4.22, 1PE.24
Ligand excluded by PLIP1PE.24: 7 residues within 4Å:- Chain C: Y.20, N.21, H.25, F.206, K.237, Y.328
- Ligands: 1PE.23
Ligand excluded by PLIP1PE.25: 5 residues within 4Å:- Chain C: K.303, G.307, M.309, M.313, G.406
Ligand excluded by PLIP1PE.26: 6 residues within 4Å:- Chain C: I.446, I.447, N.448, E.449
- Chain D: S.116, Y.416
Ligand excluded by PLIP1PE.31: 7 residues within 4Å:- Chain D: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
Ligand excluded by PLIP1PE.32: 5 residues within 4Å:- Chain D: Y.20, E.233, Q.236, K.237
- Ligands: SO4.30
Ligand excluded by PLIP1PE.33: 12 residues within 4Å:- Chain D: D.296, K.303, G.307, M.309, M.313, D.316, T.403, L.404, G.406, A.494
- Ligands: ZN.28, ZN.29
Ligand excluded by PLIP1PE.34: 7 residues within 4Å:- Chain D: N.366, K.368, R.451, D.460, E.481, Q.484
- Chain E: S.171
Ligand excluded by PLIP1PE.35: 6 residues within 4Å:- Chain D: H.25, D.26, I.27, K.28, E.199, R.202
Ligand excluded by PLIP1PE.36: 6 residues within 4Å:- Chain D: Y.416, L.431, S.434, K.435, V.441, W.442
Ligand excluded by PLIP1PE.45: 8 residues within 4Å:- Chain E: K.303, G.307, M.309, M.313, F.315, T.403, G.406, Y.410
Ligand excluded by PLIP1PE.46: 6 residues within 4Å:- Chain E: Y.20, E.233, Q.236, K.237
- Ligands: SO4.41, 1PE.47
Ligand excluded by PLIP1PE.47: 6 residues within 4Å:- Chain E: Y.20, H.25, F.206, K.237, Y.328
- Ligands: 1PE.46
Ligand excluded by PLIP1PE.48: 7 residues within 4Å:- Chain E: N.366, K.368, R.451, D.460, E.481, Q.484
- Chain F: S.171
Ligand excluded by PLIP1PE.49: 4 residues within 4Å:- Chain E: S.10, D.12, P.13, T.14
Ligand excluded by PLIP1PE.50: 6 residues within 4Å:- Chain B: E.424
- Chain E: Y.416, S.434, K.435, V.441, W.442
Ligand excluded by PLIP1PE.51: 6 residues within 4Å:- Chain D: E.371, V.372, G.373
- Chain E: D.311, L.312, W.498
Ligand excluded by PLIP1PE.55: 6 residues within 4Å:- Chain F: Y.20, N.21, H.25, K.237, L.238, Y.328
Ligand excluded by PLIP1PE.56: 7 residues within 4Å:- Chain D: S.171
- Chain F: N.366, K.368, R.451, D.460, E.481, Q.484
Ligand excluded by PLIP1PE.57: 5 residues within 4Å:- Chain F: Y.416, L.431, S.434, V.441, W.442
Ligand excluded by PLIP1PE.58: 5 residues within 4Å:- Chain F: Y.20, N.21, E.233, Q.236, K.237
Ligand excluded by PLIP1PE.59: 9 residues within 4Å:- Chain F: G.307, M.309, M.313, F.315, D.316, T.403, G.406, L.409, Y.410
Ligand excluded by PLIP- 1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.39 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 12 x ZN: ZINC ION(Non-covalent)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 29 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L