- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 12 x ZN: ZINC ION(Non-covalent)
ZN.2: 7 residues within 4Å:- Chain A: K.291, D.296, D.316, E.378
- Ligands: CO3.1, ZN.3, BEY.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.296, A:D.316, A:E.378
ZN.3: 6 residues within 4Å:- Chain A: D.296, K.303, D.376, E.378
- Ligands: ZN.2, BEY.4
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.296, A:D.296, A:D.376, A:D.376, A:E.378
ZN.13: 7 residues within 4Å:- Chain B: K.291, D.296, D.316, E.378
- Ligands: CO3.12, ZN.14, BEY.15
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.296, B:D.316, B:E.378
ZN.14: 6 residues within 4Å:- Chain B: D.296, K.303, D.376, E.378
- Ligands: ZN.13, BEY.15
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.296, B:D.376, B:D.376, B:E.378
ZN.19: 6 residues within 4Å:- Chain C: D.296, K.303, D.376, E.378
- Ligands: ZN.20, BEY.21
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.296, C:D.376, C:D.376, C:E.378
ZN.20: 6 residues within 4Å:- Chain C: K.291, D.296, D.316, E.378
- Ligands: ZN.19, BEY.21
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.296, C:D.316, C:E.378
ZN.27: 8 residues within 4Å:- Chain D: K.291, D.296, D.316, E.378, T.403
- Ligands: CO3.26, ZN.28, BEY.29
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.296, D:D.316, D:E.378
ZN.28: 6 residues within 4Å:- Chain D: D.296, K.303, D.376, E.378
- Ligands: ZN.27, BEY.29
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.296, D:D.376, D:D.376, D:E.378
ZN.36: 7 residues within 4Å:- Chain E: K.291, D.296, D.316, E.378, T.403
- Ligands: ZN.37, BEY.38
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.296, E:D.316, E:D.316, E:E.378
ZN.37: 6 residues within 4Å:- Chain E: D.296, K.303, D.376, E.378
- Ligands: ZN.36, BEY.38
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.296, E:D.376, E:D.376, E:E.378
ZN.45: 8 residues within 4Å:- Chain F: K.291, D.296, D.316, E.378, T.403
- Ligands: CO3.44, ZN.46, BEY.47
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.296, F:D.316, F:D.316, F:E.378
ZN.46: 6 residues within 4Å:- Chain F: D.296, K.303, D.376, E.378
- Ligands: ZN.45, BEY.47
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.296, F:D.296, F:D.376, F:D.376, F:E.378
- 6 x BEY: (2S)-3-[(R)-[(1S)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]-2-benzylpropanoic acid(Non-covalent)
BEY.4: 22 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, A.377, E.378, T.403, L.404, T.405, G.406, L.409, I.464, S.471, A.494
- Ligands: CO3.1, ZN.2, ZN.3
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:F.315, A:N.374, A:A.377, A:L.409, A:I.464
- Hydrogen bonds: A:K.303, A:K.303, A:D.376, A:T.403, A:G.406
- Water bridges: A:A.407
- Salt bridges: A:K.303
BEY.15: 21 residues within 4Å:- Chain B: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, A.377, E.378, R.380, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: CO3.12, ZN.13, ZN.14
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.315, B:N.374, B:A.377, B:L.409
- Hydrogen bonds: B:K.303, B:K.303, B:T.403, B:G.406
- Salt bridges: B:K.303
BEY.21: 20 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: CO3.18, ZN.19, ZN.20
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.409
- Hydrogen bonds: C:K.303, C:T.403, C:G.406
BEY.29: 22 residues within 4Å:- Chain D: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, A.377, E.378, R.380, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: CO3.26, ZN.27, ZN.28
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:F.315, D:A.377, D:L.409, D:A.494
- Hydrogen bonds: D:K.291, D:K.291, D:K.303, D:K.303, D:L.404, D:G.406
- Water bridges: D:A.407
- Salt bridges: D:K.303
BEY.38: 21 residues within 4Å:- Chain E: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, L.409, I.464, A.494
- Ligands: CO3.35, ZN.36, ZN.37
9 PLIP interactions:9 interactions with chain E- Hydrophobic interactions: E:F.315, E:L.409, E:I.464
- Hydrogen bonds: E:K.291, E:K.303, E:K.303, E:L.404, E:L.404, E:G.406
BEY.47: 21 residues within 4Å:- Chain F: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, A.377, E.378, R.380, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: CO3.44, ZN.45, ZN.46
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:N.374, F:A.377, F:L.409, F:A.494
- Hydrogen bonds: F:K.303, F:T.403, F:G.406
- Water bridges: F:A.407
- Salt bridges: F:K.303
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 5 residues within 4Å:- Chain A: I.18, E.19, Y.20, N.21
- Ligands: 1PE.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.20, A:N.21, A:N.21
SO4.6: 10 residues within 4Å:- Chain A: F.73, N.78, M.79, K.81, F.82, F.92
- Chain D: Y.93, M.94, F.95, S.101
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:F.73, D:S.101
- Salt bridges: A:K.81
SO4.22: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
8 PLIP interactions:3 interactions with chain A, 3 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: A:K.353, B:S.352, B:K.353, C:K.353
- Water bridges: A:K.353
- Salt bridges: A:K.353, B:K.353, C:K.353
SO4.30: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:2 interactions with chain F, 2 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: F:K.353, D:K.353, E:K.353
- Salt bridges: F:K.353, D:K.353, E:K.353
SO4.31: 4 residues within 4Å:- Chain D: E.19, Y.20, N.21
- Ligands: 1PE.33
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.20, D:N.21, D:N.21, D:N.21
SO4.39: 5 residues within 4Å:- Chain E: I.18, E.19, Y.20, N.21
- Ligands: 1PE.40
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:Y.20, E:N.21, E:N.21
SO4.48: 5 residues within 4Å:- Chain F: I.18, E.19, Y.20, N.21
- Ligands: 1PE.51
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Y.20, F:N.21
- Water bridges: F:I.18
- 20 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.7: 6 residues within 4Å:- Chain A: Y.20, N.21, H.25, K.237, Y.328
- Ligands: 1PE.11
Ligand excluded by PLIP1PE.8: 3 residues within 4Å:- Chain A: W.442, W.443
- Chain F: W.443
Ligand excluded by PLIP1PE.9: 5 residues within 4Å:- Chain A: Y.32, N.39, E.41, Y.187
- Ligands: 1PE.10
Ligand excluded by PLIP1PE.10: 5 residues within 4Å:- Chain A: G.37, N.39, N.66, Y.187
- Ligands: 1PE.9
Ligand excluded by PLIP1PE.11: 5 residues within 4Å:- Chain A: Y.20, E.233, K.237
- Ligands: SO4.5, 1PE.7
Ligand excluded by PLIP1PE.16: 6 residues within 4Å:- Chain B: Y.20, H.25, F.206, K.237, L.238, Y.328
Ligand excluded by PLIP1PE.17: 4 residues within 4Å:- Chain B: Y.20, E.233, Q.236, K.237
Ligand excluded by PLIP1PE.23: 5 residues within 4Å:- Chain C: Y.20, N.21, E.233, Q.236, K.237
Ligand excluded by PLIP1PE.24: 6 residues within 4Å:- Chain C: Y.20, N.21, H.25, F.206, K.237, Y.328
Ligand excluded by PLIP1PE.25: 6 residues within 4Å:- Chain C: Y.32, G.36, G.37, N.39, N.66, Y.187
Ligand excluded by PLIP1PE.32: 5 residues within 4Å:- Chain D: Y.20, N.21, H.25, K.237, Y.328
Ligand excluded by PLIP1PE.33: 4 residues within 4Å:- Chain D: Y.20, E.233, K.237
- Ligands: SO4.31
Ligand excluded by PLIP1PE.34: 3 residues within 4Å:- Chain D: N.366, K.368, D.460
Ligand excluded by PLIP1PE.40: 6 residues within 4Å:- Chain E: Y.20, E.233, Q.236, K.237
- Ligands: SO4.39, 1PE.41
Ligand excluded by PLIP1PE.41: 8 residues within 4Å:- Chain E: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
- Ligands: 1PE.40
Ligand excluded by PLIP1PE.42: 7 residues within 4Å:- Chain E: N.366, K.368, R.451, D.460, E.481, Q.484
- Chain F: S.171
Ligand excluded by PLIP1PE.43: 3 residues within 4Å:- Chain E: S.10, D.12, P.13
Ligand excluded by PLIP1PE.49: 7 residues within 4Å:- Chain F: Y.20, N.21, H.25, F.206, K.237, Y.328
- Ligands: 1PE.51
Ligand excluded by PLIP1PE.50: 6 residues within 4Å:- Chain D: S.171
- Chain F: N.366, K.368, D.460, E.481, Q.484
Ligand excluded by PLIP1PE.51: 5 residues within 4Å:- Chain F: Y.20, E.233, K.237
- Ligands: SO4.48, 1PE.49
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x BEY: (2S)-3-[(R)-[(1S)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]-2-benzylpropanoic acid(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 20 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L