- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
CO3.2: 7 residues within 4Å:- Chain A: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.291, A:G.379, A:R.380, A:L.404
CO3.8: 7 residues within 4Å:- Chain B: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.379, B:R.380, B:R.380, B:R.380
CO3.14: 9 residues within 4Å:- Chain C: K.291, A.377, E.378, G.379, R.380, L.404, T.405
- Ligands: ZN.13, R5X.16
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.379, C:R.380, C:L.404
CO3.20: 7 residues within 4Å:- Chain D: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.22
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.380, D:R.380, D:L.404
CO3.25: 7 residues within 4Å:- Chain E: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.27
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.379, E:R.380, E:L.404
CO3.31: 7 residues within 4Å:- Chain F: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: R5X.33
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:R.380, F:R.380, F:L.404
- 6 x R5X: 3-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
R5X.4: 19 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, M.313, F.315, N.374, D.376, E.378, G.379, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.1, CO3.2, ZN.3
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.409
- Hydrogen bonds: A:K.303, A:E.378, A:G.379, A:L.404, A:S.471
- Water bridges: A:R.380
- pi-Stacking: A:F.315
R5X.10: 16 residues within 4Å:- Chain B: K.291, D.296, K.303, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.7, CO3.8, ZN.9
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:L.409
- Hydrogen bonds: B:K.291, B:K.303, B:D.376, B:E.378, B:G.379, B:L.404, B:G.406
- Water bridges: B:R.380, B:R.380, B:S.465, B:S.471
R5X.16: 19 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, M.313, F.315, D.376, E.378, G.379, R.380, T.403, L.404, T.405, G.406, I.464, A.494
- Ligands: ZN.13, CO3.14, ZN.15
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:A.494
- Hydrogen bonds: C:K.291, C:D.296, C:K.303, C:E.378, C:G.379, C:R.380, C:L.404
- Water bridges: C:G.406, C:G.406
R5X.22: 18 residues within 4Å:- Chain D: K.291, D.296, K.303, M.309, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.19, CO3.20, ZN.21
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:L.409
- Hydrogen bonds: D:K.303, D:D.376, D:E.378, D:G.379, D:L.404, D:G.406, D:S.471
- Water bridges: D:R.380
R5X.27: 20 residues within 4Å:- Chain E: K.291, D.296, K.303, M.309, F.315, N.374, D.376, E.378, G.379, R.380, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.24, CO3.25, ZN.26
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:L.409
- Hydrogen bonds: E:K.303, E:D.376, E:E.378, E:G.379, E:L.404, E:G.406, E:S.471
- Water bridges: E:R.380, E:S.471
R5X.33: 20 residues within 4Å:- Chain F: K.291, D.296, K.303, M.309, M.313, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.30, CO3.31, ZN.32
12 PLIP interactions:12 interactions with chain F- Hydrophobic interactions: F:L.409, F:A.494
- Hydrogen bonds: F:K.291, F:K.303, F:D.376, F:E.378, F:G.379, F:L.404, F:G.406, F:S.471, F:S.471
- pi-Cation interactions: F:R.380
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.5: 6 residues within 4Å:- Chain A: Y.20, N.21, H.25, F.206, K.237, Y.328
No protein-ligand interaction detected (PLIP)1PE.6: 4 residues within 4Å:- Chain A: Y.20, E.233, Q.236, K.237
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.237
1PE.12: 6 residues within 4Å:- Chain B: Y.20, N.21, H.25, F.206, K.237, Y.328
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.328
1PE.17: 3 residues within 4Å:- Chain C: Y.20, E.233, K.237
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.237
1PE.18: 6 residues within 4Å:- Chain C: Y.20, N.21, H.25, F.206, K.237, Y.328
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Y.328
1PE.23: 5 residues within 4Å:- Chain D: Y.20, H.25, F.206, K.237, Y.328
No protein-ligand interaction detected (PLIP)1PE.29: 6 residues within 4Å:- Chain E: Y.20, N.21, H.25, F.206, K.237, Y.328
No protein-ligand interaction detected (PLIP)1PE.34: 5 residues within 4Å:- Chain F: Y.20, N.21, H.25, K.237, Y.328
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:N.21, F:H.25, F:K.237
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.11: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
8 PLIP interactions:3 interactions with chain C, 2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: C:S.352, C:K.353, A:K.353, B:S.352, B:K.353
- Salt bridges: C:K.353, A:K.353, B:K.353
SO4.28: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:2 interactions with chain E, 2 interactions with chain F, 2 interactions with chain D- Hydrogen bonds: E:K.353, F:K.353, D:K.353
- Salt bridges: E:K.353, F:K.353, D:K.353
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 family aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 6 x R5X: 3-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 family aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L