- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
CO3.2: 8 residues within 4Å:- Chain A: K.291, A.377, E.378, G.379, R.380, L.404, T.405
- Ligands: 3MW.6
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.291, A:G.379, A:R.380, A:R.380, A:R.380
CO3.8: 8 residues within 4Å:- Chain B: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.7, 3MW.11
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.380, B:R.380, B:R.380
CO3.13: 6 residues within 4Å:- Chain C: K.291, A.377, G.379, R.380, L.404
- Ligands: 3MW.18
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.379, C:R.380, C:L.404
CO3.20: 7 residues within 4Å:- Chain D: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: 3MW.22
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:G.379, D:R.380, D:L.404
CO3.24: 7 residues within 4Å:- Chain E: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: 3MW.29
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:K.291, E:R.380, E:R.380
CO3.31: 8 residues within 4Å:- Chain F: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: ZN.30, 3MW.34
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:G.379, F:R.380, F:L.404
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.4: 5 residues within 4Å:- Chain A: A.305, P.306, G.406, Y.410
- Ligands: 3MW.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.306
1PE.5: 5 residues within 4Å:- Chain A: Y.20, N.21, H.25, F.206, Y.328
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.21
1PE.16: 6 residues within 4Å:- Chain C: Y.20, H.25, F.206, K.237, L.238, Y.328
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Y.328
1PE.17: 8 residues within 4Å:- Chain C: I.446, I.447, N.448, E.449
- Chain D: E.117, A.118, S.415, Y.416
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:E.117, D:E.117, D:S.415, C:N.448, C:N.448
- Water bridges: D:Y.416
1PE.27: 7 residues within 4Å:- Chain E: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
1 PLIP interactions:1 interactions with chain E- Water bridges: E:T.332
1PE.28: 3 residues within 4Å:- Chain E: Y.20, N.21, K.237
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:K.237
1PE.33: 3 residues within 4Å:- Chain F: D.12, P.13, T.14
No protein-ligand interaction detected (PLIP)- 6 x 3MW: 4-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
3MW.6: 22 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, G.379, R.380, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.1, CO3.2, ZN.3, 1PE.4
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.409, A:A.494
- Hydrogen bonds: A:K.291, A:N.374, A:D.376, A:E.378, A:G.379, A:G.406
3MW.11: 19 residues within 4Å:- Chain B: K.291, D.296, K.303, M.309, M.313, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.7, CO3.8, ZN.9
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.409, B:A.494
- Hydrogen bonds: B:K.303, B:N.374, B:E.378, B:G.379, B:L.404
3MW.18: 22 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, G.379, R.380, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.12, CO3.13, ZN.14
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:F.315, C:L.409, C:A.494
- Hydrogen bonds: C:K.291, C:D.296, C:K.303, C:N.374, C:D.376, C:E.378, C:G.379, C:L.404, C:G.406
3MW.22: 21 residues within 4Å:- Chain D: K.291, D.296, K.303, M.309, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, L.409, I.464, S.471, A.494
- Ligands: ZN.19, CO3.20, ZN.21
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:L.409, D:A.494
- Hydrogen bonds: D:K.303, D:N.374, D:D.376, D:L.404, D:G.406
3MW.29: 21 residues within 4Å:- Chain E: K.291, D.296, K.303, M.309, L.312, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.23, CO3.24, ZN.25
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:L.312, E:L.409, E:A.494
- Hydrogen bonds: E:K.303, E:N.374, E:D.376, E:G.406
3MW.34: 19 residues within 4Å:- Chain F: K.291, D.296, K.303, M.309, F.315, D.316, N.374, D.376, E.378, R.380, L.404, T.405, G.406, L.409, I.464, A.494
- Ligands: ZN.30, CO3.31, ZN.32
8 PLIP interactions:8 interactions with chain F- Hydrophobic interactions: F:L.409, F:A.494
- Hydrogen bonds: F:K.291, F:K.303, F:N.374, F:D.376, F:E.378, F:G.406
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
6 PLIP interactions:3 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: B:S.352, B:K.353, C:K.353, A:K.353
- Salt bridges: B:K.353, C:K.353
SO4.15: 4 residues within 4Å:- Chain C: G.43, K.135, L.136, S.137
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain E- Hydrogen bonds: C:G.43, C:K.135, C:S.137
- Salt bridges: E:K.81
SO4.26: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
4 PLIP interactions:1 interactions with chain D, 2 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: D:K.353, E:S.352, E:K.353, F:K.353
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 6 x 3MW: 4-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F