- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
ZN.2: 7 residues within 4Å:- Chain A: K.291, D.296, D.316, E.378
- Ligands: CO3.1, BES.3, MG.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.296, A:D.316, A:E.378
ZN.11: 7 residues within 4Å:- Chain B: K.291, D.296, D.316, E.378
- Ligands: CO3.10, BES.12, MG.13
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.296, B:D.316, B:E.378
ZN.19: 7 residues within 4Å:- Chain C: K.291, D.296, D.316, E.378
- Ligands: CO3.18, BES.20, MG.21
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.296, C:D.316, C:E.378
ZN.25: 7 residues within 4Å:- Chain D: K.291, D.296, D.316, E.378
- Ligands: CO3.24, BES.26, MG.27
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.296, D:D.316, D:E.378
ZN.35: 7 residues within 4Å:- Chain E: K.291, D.296, D.316, E.378
- Ligands: CO3.34, BES.36, MG.37
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:D.296, E:D.316, E:E.378
ZN.43: 7 residues within 4Å:- Chain F: K.291, D.296, D.316, E.378
- Ligands: CO3.42, BES.44, MG.45
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:D.296, F:D.316, F:E.378
- 6 x BES: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID(Non-covalent)
BES.3: 19 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, A.494
- Ligands: CO3.1, ZN.2, MG.4
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.315, A:A.494
- Hydrogen bonds: A:K.303, A:L.404, A:G.406
- Water bridges: A:A.407
BES.12: 19 residues within 4Å:- Chain B: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, A.494
- Ligands: CO3.10, ZN.11, MG.13
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.315, B:A.494
- Hydrogen bonds: B:K.291, B:K.291, B:K.303, B:L.404, B:G.406
BES.20: 19 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, A.494
- Ligands: CO3.18, ZN.19, MG.21
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:F.315, C:A.494
- Hydrogen bonds: C:D.296, C:K.303, C:L.404, C:G.406
- Water bridges: C:D.376, C:A.407
BES.26: 20 residues within 4Å:- Chain D: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, S.471, A.494
- Ligands: CO3.24, ZN.25, MG.27
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:F.315, D:A.494
- Hydrogen bonds: D:K.291, D:K.303, D:T.403, D:L.404, D:G.406
- Water bridges: D:A.407
BES.36: 20 residues within 4Å:- Chain E: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, S.471, A.494
- Ligands: CO3.34, ZN.35, MG.37
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:F.315, E:A.494
- Hydrogen bonds: E:K.291, E:D.296, E:K.303, E:L.404, E:G.406
BES.44: 19 residues within 4Å:- Chain F: K.291, D.296, K.303, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, I.464, A.494
- Ligands: CO3.42, ZN.43, MG.45
8 PLIP interactions:8 interactions with chain F- Hydrophobic interactions: F:F.315, F:I.464, F:A.494
- Hydrogen bonds: F:D.296, F:K.303, F:T.403, F:L.404, F:G.406
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 6 residues within 4Å:- Chain A: D.296, K.303, D.376, E.378
- Ligands: ZN.2, BES.3
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.296, A:D.296, A:D.376, A:D.376, A:E.378
MG.13: 6 residues within 4Å:- Chain B: D.296, K.303, D.376, E.378
- Ligands: ZN.11, BES.12
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.296, B:D.376, B:D.376, B:E.378
MG.21: 6 residues within 4Å:- Chain C: D.296, K.303, D.376, E.378
- Ligands: ZN.19, BES.20
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.296, C:D.376, C:D.376, C:E.378
MG.27: 6 residues within 4Å:- Chain D: D.296, K.303, D.376, E.378
- Ligands: ZN.25, BES.26
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.296, D:D.376, D:D.376, D:E.378
MG.37: 5 residues within 4Å:- Chain E: D.296, D.376, E.378
- Ligands: ZN.35, BES.36
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.296, E:D.376, E:D.376, E:E.378
MG.45: 6 residues within 4Å:- Chain F: D.296, K.303, D.376, E.378
- Ligands: ZN.43, BES.44
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.296, F:D.376, F:D.376, F:E.378
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 5 residues within 4Å:- Chain A: I.18, E.19, Y.20, N.21
- Ligands: 1PE.9
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.20, A:N.21, A:N.21
- Water bridges: A:I.18
SO4.6: 5 residues within 4Å:- Chain A: E.42, G.43, L.136, S.137
- Chain D: K.81
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:G.43, A:S.137
- Water bridges: D:K.81, D:K.81
- Salt bridges: D:K.81
SO4.7: 1 residues within 4Å:- Chain A: K.28
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:K.28
SO4.14: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
8 PLIP interactions:3 interactions with chain B, 2 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: B:K.353, C:K.353, A:K.353
- Water bridges: B:N.354, A:K.353
- Salt bridges: B:K.353, C:K.353, A:K.353
SO4.28: 5 residues within 4Å:- Chain D: I.18, E.19, Y.20, N.21
- Ligands: 1PE.32
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.20, D:N.21, D:N.21
- Water bridges: D:I.18
SO4.29: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:2 interactions with chain E, 2 interactions with chain D, 2 interactions with chain F- Hydrogen bonds: E:K.353, D:K.353, F:K.353
- Salt bridges: E:K.353, D:K.353, F:K.353
SO4.38: 5 residues within 4Å:- Chain E: I.18, E.19, Y.20, N.21
- Ligands: 1PE.39
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:Y.20, E:N.21, E:N.21
SO4.46: 5 residues within 4Å:- Chain F: I.18, E.19, Y.20, N.21
- Ligands: 1PE.48
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Y.20, F:N.21, F:N.21
- 17 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.8: 6 residues within 4Å:- Chain A: Y.20, N.21, H.25, K.237, L.238, Y.328
Ligand excluded by PLIP1PE.9: 5 residues within 4Å:- Chain A: Y.20, E.233, Q.236, K.237
- Ligands: SO4.5
Ligand excluded by PLIP1PE.15: 8 residues within 4Å:- Chain B: Y.20, H.25, F.206, K.237, L.238, Y.328
- Ligands: 1PE.16, 1PE.17
Ligand excluded by PLIP1PE.16: 4 residues within 4Å:- Chain B: Y.20, E.233, K.237
- Ligands: 1PE.15
Ligand excluded by PLIP1PE.17: 2 residues within 4Å:- Chain B: K.334
- Ligands: 1PE.15
Ligand excluded by PLIP1PE.22: 5 residues within 4Å:- Chain C: Y.20, E.233, Q.236, K.237
- Ligands: 1PE.23
Ligand excluded by PLIP1PE.23: 7 residues within 4Å:- Chain C: Y.20, N.21, H.25, F.206, K.237, Y.328
- Ligands: 1PE.22
Ligand excluded by PLIP1PE.30: 5 residues within 4Å:- Chain D: Y.20, N.21, H.25, K.237, Y.328
Ligand excluded by PLIP1PE.31: 6 residues within 4Å:- Chain D: N.366, K.368, D.460, E.481, Q.484
- Chain E: S.171
Ligand excluded by PLIP1PE.32: 4 residues within 4Å:- Chain D: Y.20, E.233, K.237
- Ligands: SO4.28
Ligand excluded by PLIP1PE.33: 5 residues within 4Å:- Chain D: N.422, N.423, N.485, T.486, A.487
Ligand excluded by PLIP1PE.39: 5 residues within 4Å:- Chain E: Y.20, E.233, Q.236, K.237
- Ligands: SO4.38
Ligand excluded by PLIP1PE.40: 7 residues within 4Å:- Chain E: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
Ligand excluded by PLIP1PE.41: 6 residues within 4Å:- Chain E: N.366, K.368, R.451, D.460, E.481
- Chain F: S.171
Ligand excluded by PLIP1PE.47: 6 residues within 4Å:- Chain F: Y.20, N.21, H.25, F.206, K.237, Y.328
Ligand excluded by PLIP1PE.48: 5 residues within 4Å:- Chain F: Y.20, E.233, Q.236, K.237
- Ligands: SO4.46
Ligand excluded by PLIP1PE.49: 5 residues within 4Å:- Chain D: S.171
- Chain F: N.366, K.368, D.460, Q.484
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x BES: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 17 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F