- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
CO3.2: 7 residues within 4Å:- Chain A: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: 3MW.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.291, A:R.380, A:R.380
CO3.10: 7 residues within 4Å:- Chain B: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: 3MW.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.291, B:R.380, B:R.380
CO3.15: 7 residues within 4Å:- Chain C: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: 3MW.17
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.379, C:R.380, C:L.404
CO3.19: 7 residues within 4Å:- Chain D: K.291, A.377, G.379, R.380, L.404, T.405
- Ligands: 3MW.22
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:A.377, D:G.379, D:R.380, D:L.404
CO3.24: 7 residues within 4Å:- Chain E: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: 3MW.28
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:R.380, E:R.380
CO3.31: 7 residues within 4Å:- Chain F: K.291, A.377, E.378, G.379, R.380, L.404
- Ligands: 3MW.34
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:G.379, F:R.380, F:L.404
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
6 PLIP interactions:2 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: C:K.353, A:K.353, B:K.353
- Salt bridges: C:K.353, A:K.353, B:K.353
SO4.5: 7 residues within 4Å:- Chain A: Y.161, D.166, Y.209, S.212, K.504, P.505
- Chain C: Y.458
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.166, A:D.166, A:D.166, A:S.212
SO4.21: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
5 PLIP interactions:2 interactions with chain F, 1 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: F:K.353, E:K.353, D:K.353
- Salt bridges: F:K.353, D:K.353
SO4.26: 4 residues within 4Å:- Chain E: I.18, E.19, Y.20, N.21
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:Y.20, E:N.21
SO4.33: 4 residues within 4Å:- Chain F: I.18, E.19, Y.20, N.21
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Y.20, F:N.21, F:N.21
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.6: 7 residues within 4Å:- Chain A: Y.20, N.21, H.25, F.206, K.237, Y.328
- Ligands: 1PE.7
No protein-ligand interaction detected (PLIP)1PE.7: 5 residues within 4Å:- Chain A: Y.20, N.21, E.233, K.237
- Ligands: 1PE.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.21, A:K.237
1PE.12: 7 residues within 4Å:- Chain B: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.237
1PE.27: 5 residues within 4Å:- Chain E: Y.20, H.25, F.206, K.237, Y.328
1 PLIP interactions:1 interactions with chain E- Water bridges: E:T.332
- 6 x 3MW: 4-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
3MW.8: 22 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, L.312, M.313, F.315, D.316, D.376, E.378, R.380, T.403, L.404, T.405, G.406, L.409, I.464, S.471, A.494
- Ligands: ZN.1, CO3.2, ZN.3
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.312, A:F.315, A:L.409, A:A.494
- Hydrogen bonds: A:K.303, A:D.376, A:E.378, A:L.404, A:G.406
3MW.13: 20 residues within 4Å:- Chain B: K.291, D.296, K.303, M.309, F.315, D.316, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.9, CO3.10, ZN.11
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.409, B:A.494
- Hydrogen bonds: B:K.303, B:N.374, B:D.376, B:G.379, B:L.404, B:G.406
3MW.17: 20 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, F.315, D.316, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: ZN.14, CO3.15, ZN.16
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:L.409, C:A.494
- Hydrogen bonds: C:K.291, C:K.303, C:N.374, C:D.376, C:G.379, C:L.404, C:G.406
- pi-Cation interactions: C:R.380
3MW.22: 18 residues within 4Å:- Chain D: K.291, D.296, K.303, M.309, F.315, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.18, CO3.19, ZN.20
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:L.409, D:A.494
- Hydrogen bonds: D:K.291, D:K.303, D:N.374, D:D.376, D:E.378, D:G.379, D:L.404, D:G.406
3MW.28: 22 residues within 4Å:- Chain E: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, G.379, T.403, L.404, T.405, G.406, L.409, I.464, S.471, A.494
- Ligands: ZN.23, CO3.24, ZN.25
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:L.409
- Hydrogen bonds: E:K.303, E:N.374, E:D.376, E:G.379, E:L.404, E:G.406
3MW.34: 19 residues within 4Å:- Chain F: K.291, D.296, K.303, M.309, L.312, M.313, F.315, D.316, N.374, D.376, E.378, L.404, T.405, G.406, L.409, A.494
- Ligands: ZN.30, CO3.31, ZN.32
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:L.409
- Hydrogen bonds: F:K.291, F:K.303, F:N.374, F:D.376, F:E.378, F:G.379, F:L.404, F:G.406
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 6 x 3MW: 4-amino-N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(1H-pyrazol-1-yl)phenyl]ethyl}benzamide(Non-covalent)
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mistry, S.N. et al., Two-Pronged Attack: Dual Inhibition of Plasmodium falciparum M1 and M17 Metalloaminopeptidases by a Novel Series of Hydroxamic Acid-Based Inhibitors. J.Med.Chem. (2014)
- Release Date
- 2014-10-29
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
JE
KF
L