- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 12 x ZN: ZINC ION(Non-covalent)
ZN.2: 6 residues within 4Å:- Chain A: D.296, K.303, D.376, E.378
- Ligands: ZN.3, BEY.4
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.296, A:D.376, A:D.376, A:E.378
ZN.3: 7 residues within 4Å:- Chain A: K.291, D.296, D.316, E.378
- Ligands: CO3.1, ZN.2, BEY.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.296, A:D.316, A:E.378
ZN.11: 6 residues within 4Å:- Chain B: D.296, K.303, D.376, E.378
- Ligands: ZN.12, BEY.13
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.296, B:D.296, B:D.376, B:D.376, B:E.378
ZN.12: 7 residues within 4Å:- Chain B: K.291, D.296, D.316, E.378
- Ligands: CO3.10, ZN.11, BEY.13
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.296, B:D.316, B:E.378
ZN.18: 6 residues within 4Å:- Chain C: K.291, D.296, D.316, E.378
- Ligands: ZN.19, BEY.20
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.296, C:D.316, C:E.378
ZN.19: 6 residues within 4Å:- Chain C: D.296, K.303, D.376, E.378
- Ligands: ZN.18, BEY.20
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.296, C:D.376, C:D.376, C:E.378
ZN.25: 7 residues within 4Å:- Chain D: K.291, D.296, D.316, E.378
- Ligands: CO3.24, ZN.26, BEY.27
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.296, D:D.316, D:E.378
ZN.26: 6 residues within 4Å:- Chain D: D.296, K.303, D.376, E.378
- Ligands: ZN.25, BEY.27
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.296, D:D.376, D:D.376, D:E.378
ZN.34: 7 residues within 4Å:- Chain E: K.291, D.296, D.316, E.378
- Ligands: CO3.33, ZN.35, BEY.36
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.296, E:D.316, E:D.316, E:E.378
ZN.35: 6 residues within 4Å:- Chain E: D.296, K.303, D.376, E.378
- Ligands: ZN.34, BEY.36
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.296, E:D.376, E:D.376, E:E.378
ZN.43: 7 residues within 4Å:- Chain F: K.291, D.296, D.316, E.378, T.403
- Ligands: ZN.44, BEY.45
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.296, F:D.316, F:D.316, F:E.378
ZN.44: 6 residues within 4Å:- Chain F: D.296, K.303, D.376, E.378
- Ligands: ZN.43, BEY.45
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.296, F:D.296, F:D.376, F:D.376, F:E.378
- 6 x BEY: (2S)-3-[(R)-[(1S)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]-2-benzylpropanoic acid(Non-covalent)
BEY.4: 22 residues within 4Å:- Chain A: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, A.377, E.378, R.380, T.403, L.404, T.405, G.406, L.409, I.464, A.494
- Ligands: CO3.1, ZN.2, ZN.3
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:F.315, A:N.374, A:A.377, A:L.409, A:I.464, A:A.494
- Hydrogen bonds: A:K.303, A:T.403, A:G.406
- Water bridges: A:A.407
- Salt bridges: A:K.303
BEY.13: 21 residues within 4Å:- Chain B: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, L.409, I.464, A.494
- Ligands: CO3.10, ZN.11, ZN.12
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:F.315, B:L.409, B:I.464, B:A.494
- Hydrogen bonds: B:K.291, B:K.291, B:K.303, B:K.303, B:G.406
- Water bridges: B:A.407
- Salt bridges: B:K.303
BEY.20: 22 residues within 4Å:- Chain C: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, A.407, L.409, I.464, A.494
- Ligands: CO3.17, ZN.18, ZN.19
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:F.315, C:N.374, C:L.409, C:I.464, C:A.494
- Hydrogen bonds: C:K.303, C:T.403, C:L.404, C:G.406, C:A.407
BEY.27: 21 residues within 4Å:- Chain D: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, E.378, R.380, T.403, L.404, T.405, G.406, L.409, S.471, A.494
- Ligands: CO3.24, ZN.25, ZN.26
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:F.315, D:L.409, D:A.494
- Hydrogen bonds: D:K.291, D:K.303, D:T.403, D:G.406
- Water bridges: D:A.407, D:A.407
- Salt bridges: D:K.303
BEY.36: 21 residues within 4Å:- Chain E: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, A.377, E.378, R.380, T.403, L.404, T.405, G.406, L.409, A.494
- Ligands: CO3.33, ZN.34, ZN.35
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:A.377, E:L.409
- Hydrogen bonds: E:K.291, E:K.303, E:K.303, E:T.403, E:L.404, E:G.406, E:S.471
- Water bridges: E:A.407
BEY.45: 23 residues within 4Å:- Chain F: K.291, D.296, K.303, M.309, M.313, F.315, D.316, N.374, D.376, A.377, E.378, R.380, T.403, L.404, T.405, G.406, A.407, L.409, I.464, A.494
- Ligands: CO3.42, ZN.43, ZN.44
15 PLIP interactions:15 interactions with chain F- Hydrophobic interactions: F:F.315, F:F.315, F:N.374, F:A.377, F:L.409, F:I.464, F:A.494
- Hydrogen bonds: F:K.291, F:D.296, F:D.296, F:D.296, F:K.303, F:G.406, F:A.407
- Salt bridges: F:K.303
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 5 residues within 4Å:- Chain A: I.18, E.19, Y.20, N.21
- Ligands: 1PE.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.20, A:N.21, A:N.21
SO4.6: 3 residues within 4Å:- Chain A: E.42, G.43, S.137
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Salt bridges: D:K.81
- Hydrogen bonds: A:G.43, A:S.137, A:S.137, A:S.137
SO4.7: 2 residues within 4Å:- Chain A: K.28, H.183
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:K.28
SO4.21: 6 residues within 4Å:- Chain A: S.352, K.353
- Chain B: S.352, K.353
- Chain C: S.352, K.353
8 PLIP interactions:2 interactions with chain B, 2 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: B:K.353, C:K.353, A:K.353
- Salt bridges: B:K.353, C:K.353, A:K.353
- Water bridges: A:K.353, A:K.353
SO4.28: 4 residues within 4Å:- Chain D: E.19, Y.20, N.21
- Ligands: 1PE.31
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.20, D:N.21, D:N.21
SO4.37: 6 residues within 4Å:- Chain D: S.352, K.353
- Chain E: S.352, K.353
- Chain F: S.352, K.353
6 PLIP interactions:2 interactions with chain F, 2 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: F:K.353, D:K.353, E:K.353
- Salt bridges: F:K.353, D:K.353, E:K.353
SO4.38: 4 residues within 4Å:- Chain E: I.18, Y.20, N.21
- Ligands: 1PE.39
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:Y.20, E:N.21, E:N.21
SO4.46: 5 residues within 4Å:- Chain F: I.18, E.19, Y.20, N.21
- Ligands: 1PE.48
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Y.20, F:N.21, F:N.21
- 17 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.8: 5 residues within 4Å:- Chain A: Y.20, N.21, H.25, K.237, Y.328
Ligand excluded by PLIP1PE.9: 6 residues within 4Å:- Chain A: Y.20, N.21, E.233, Q.236, K.237
- Ligands: SO4.5
Ligand excluded by PLIP1PE.14: 8 residues within 4Å:- Chain B: Y.20, N.21, H.25, F.206, K.237, L.238, Y.328
- Ligands: 1PE.15
Ligand excluded by PLIP1PE.15: 4 residues within 4Å:- Chain B: Y.20, E.233, K.237
- Ligands: 1PE.14
Ligand excluded by PLIP1PE.16: 1 residues within 4Å:- Chain B: T.332
Ligand excluded by PLIP1PE.22: 6 residues within 4Å:- Chain C: Y.20, N.21, E.233, Q.236, K.237
- Ligands: 1PE.23
Ligand excluded by PLIP1PE.23: 7 residues within 4Å:- Chain C: Y.20, N.21, H.25, K.237, L.238, Y.328
- Ligands: 1PE.22
Ligand excluded by PLIP1PE.29: 5 residues within 4Å:- Chain D: Y.20, N.21, H.25, K.237, Y.328
Ligand excluded by PLIP1PE.30: 6 residues within 4Å:- Chain D: N.366, K.368, D.460, E.481, Q.484
- Chain E: S.171
Ligand excluded by PLIP1PE.31: 4 residues within 4Å:- Chain D: Y.20, E.233, K.237
- Ligands: SO4.28
Ligand excluded by PLIP1PE.32: 3 residues within 4Å:- Chain D: N.422, N.423, T.486
Ligand excluded by PLIP1PE.39: 6 residues within 4Å:- Chain E: Y.20, E.233, Q.236, K.237
- Ligands: SO4.38, 1PE.40
Ligand excluded by PLIP1PE.40: 7 residues within 4Å:- Chain E: Y.20, N.21, H.25, F.206, K.237, Y.328
- Ligands: 1PE.39
Ligand excluded by PLIP1PE.41: 5 residues within 4Å:- Chain E: K.368, R.451, D.460, E.481
- Chain F: S.171
Ligand excluded by PLIP1PE.47: 6 residues within 4Å:- Chain F: Y.20, N.21, H.25, F.206, K.237, Y.328
Ligand excluded by PLIP1PE.48: 5 residues within 4Å:- Chain F: Y.20, E.233, Q.236, K.237
- Ligands: SO4.46
Ligand excluded by PLIP1PE.49: 5 residues within 4Å:- Chain D: S.171
- Chain F: N.366, K.368, D.460, Q.484
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CO3: CARBONATE ION(Non-functional Binders)
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x BEY: (2S)-3-[(R)-[(1S)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]-2-benzylpropanoic acid(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 17 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGowan, S. et al., Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-02-02
- Peptides
- M17 leucyl aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F