SMTL ID : 3qo9.1

Crystal structure of HIV-1 Reverse Transcriptase (RT) in complex with TSAO-T, a non-nucleoside RT inhibitor (NNRTI)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x QO9: 1-[(5R,6R,8R,9R)-4-amino-9-{[tert-butyl(dimethyl)silyl]oxy}-6-({[tert-butyl(dimethyl)silyl]oxy}methyl)-2,2-dioxido-1,7-dioxa-2-thiaspiro[4.4]non-3-en-8-yl]-5-methylpyrimidine-2,4(1H,3H)-dione(Non-covalent)

QO9.1: 19 residues within 4Å: Chain A: P.97, L.102, K.103, K.104, K.105, V.108, V.181, Y.183, Y.185, Y.190, G.192, K.222, F.229, W.231, L.236, H.237, P.238, Y.320 Chain B: E.138 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.97, A:L.102, A:K.104, A:F.229, A:W.231, A:W.231, A:L.236, A:Y.320, B:E.138 Hydrogen bonds: A:K.222 Water bridges: A:K.103, A:Y.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, K. et al., Crystal Structure of tert-Butyldimethylsilyl-spiroaminooxathioledioxide-thymine (TSAO-T) in Complex with HIV-1 Reverse Transcriptase (RT) Redefines the Elastic Limits of the Non-nucleoside Inhibitor-Binding Pocket. J.Med.Chem. (2011)

Release Date

2011-05-04

Peptides

Reverse transcriptase/ ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ ribonuclease H

p51 RT

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