SMTL ID : 3ru1.1

Structure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Aminoquinolin-3-yl)-N-(cyclohexylmethyl)propanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.64, T.122, E.123, S.124 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.126 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: R.115 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: R.368, R.370 Ligand excluded by PLIP

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 11 residues within 4Å: Chain A: K.28, S.29, G.30, Q.31, G.32, Y.33, V.189, T.251, A.354, E.358 Ligands: GOL.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.28, A:G.30, A:T.251 GOL.6: 4 residues within 4Å: Chain A: H.68, R.69, Y.70, Q.72 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.68, A:Y.70, A:Y.70 Water bridges: A:Y.70 GOL.7: 5 residues within 4Å: Chain A: T.250, T.251, N.252, R.254 Ligands: GOL.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.251, A:N.252 Water bridges: A:T.251 GOL.8: 4 residues within 4Å: Chain A: H.200, Y.203, T.204, G.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.200, A:Y.203, A:G.205 GOL.9: 9 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, I.129, G.249, T.251 Ligands: GOL.5, GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.249 Water bridges: A:G.30, A:T.251

1 x 3RU: 3-(2-aminoquinolin-3-yl)-N-(cyclohexylmethyl)propanamide(Non-covalent)

3RU.10: 9 residues within 4Å: Chain A: D.51, G.53, S.54, V.88, Y.90, F.127, I.137, Y.217, D.247 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.88, A:F.127, A:I.137 Hydrogen bonds: A:D.51, A:G.53, A:G.53, A:Y.217 pi-Stacking: A:Y.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, Y. et al., From Fragment Screening to In Vivo Efficacy: Optimization of a Series of 2-Aminoquinolines as Potent Inhibitors of Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1). J.Med.Chem. (2011)

Release Date

2011-08-31

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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