SMTL ID : 3vi8.1

Human PPAR alpha ligand binding domain in complex with a synthetic agonist APHM13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 13M: (2S)-2-(4-methoxy-3-{[(pyren-1-ylcarbonyl)amino]methyl}benzyl)butanoic acid(Non-covalent)

13M.1: 21 residues within 4Å: Chain A: L.52, V.60, I.77, F.78, C.80, C.81, Q.82, T.84, S.85, Y.119, F.123, L.126, M.135, V.137, A.138, I.144, I.159, M.160, H.245, L.265, Y.269 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.52, A:V.60, A:V.60, A:I.77, A:F.78, A:Q.82, A:T.84, A:F.123, A:V.137, A:V.137, A:A.138, A:I.144, A:I.159 Hydrogen bonds: A:C.81, A:T.84, A:S.85, A:Y.119, A:Y.269 Salt bridges: A:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuwabara, N. et al., Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype. J.Med.Chem. (2012)

Release Date

2012-08-29

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor alpha

Related Entries With Identical Sequence