SMTL ID : 4azy.1

Design and Synthesis of BACE1 Inhibitors with In Vivo Brain Reduction of beta-Amyloid Peptides (COMPOUND 10)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: S.206, L.207, W.208 Ligands: ACT.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.208 Hydrogen bonds: A:L.207 Water bridges: A:L.207, A:Y.209 ACT.2: 2 residues within 4Å: Chain A: E.309 Ligands: ACT.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.309, A:E.309, A:V.310 ACT.3: 6 residues within 4Å: Chain A: K.94, W.95, E.96, E.123, S.124, D.125 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain A: E.358 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.358

1 x 7F3: (1S)-4-fluoro-1-(4-fluoro-3-pyrimidin-5-ylphenyl)-1-[2-(trifluoromethyl)pyridin-4-yl]-1H-isoindol-3-amine(Non-covalent)

7F3.5: 20 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, N.56, A.58, Y.90, Q.92, W.95, F.127, I.129, W.134, I.137, D.247, G.249, T.250, T.251 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.90, A:Y.90, A:F.127, A:F.127, A:I.137 Hydrogen bonds: A:D.51 Water bridges: A:G.32, A:T.251, A:T.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swahn, B.M. et al., Design and synthesis of beta-site amyloid precursor protein cleaving enzyme (BACE1) inhibitors with in vivo brain reduction of beta-amyloid peptides. J. Med. Chem. (2012)

Release Date

2012-10-17

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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