SMTL ID : 4b00.1

Design and Synthesis of BACE1 Inhibitors with In Vivo Brain Reduction of beta-Amyloid Peptides (COMPOUND (R)-41)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: Y.217, K.243, T.348 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.348 Hydrogen bonds: A:Y.217, A:T.348 Water bridges: A:G.53, A:Y.217 Salt bridges: A:K.243 ACT.2: 2 residues within 4Å: Chain A: L.207, W.208 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.208 Water bridges: A:L.207 ACT.3: 4 residues within 4Å: Chain A: G.85, V.86, Y.87, E.96 No protein-ligand interaction detected (PLIP) ACT.4: 2 residues within 4Å: Chain A: V.112, T.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.113 Water bridges: A:V.112, A:T.113

1 x I6X: 5-{(1R)-3-amino-4-fluoro-1-[3-(5-prop-1-yn-1-ylpyridin-3-yl)phenyl]-1H-isoindol-1-yl}-1-ethyl-3-methylpyridin-2(1H)-one(Non-covalent)

I6X.5: 22 residues within 4Å: Chain A: S.29, G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, Y.90, Q.92, W.95, F.127, I.129, W.134, I.137, D.247, S.248, G.249, T.250, T.251, A.354 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.49, A:V.88, A:Y.90, A:F.127, A:F.127, A:W.134, A:I.137, A:A.354 Hydrogen bonds: A:D.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swahn, B.M. et al., Design and synthesis of beta-site amyloid precursor protein cleaving enzyme (BACE1) inhibitors with in vivo brain reduction of beta-amyloid peptides. J. Med. Chem. (2012)

Release Date

2012-10-17

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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