SMTL ID : 4dus.1

Structure of Bace-1 (Beta-Secretase) in complex with N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: H.64, E.123, S.124 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.126 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: E.153 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: R.368 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: Y.87, K.94 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: Y.87, P.148 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: Y.87, P.89 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 9 residues within 4Å: Chain A: K.28, S.29, G.30, G.32, Y.33, V.189, T.251, A.354, E.358 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.28, A:G.30, A:G.32, A:E.358 GOL.9: 3 residues within 4Å: Chain A: Q.44, T.45, R.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.45 Water bridges: A:Y.70

1 x 0MP: N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide(Non-covalent)

0MP.10: 22 residues within 4Å: Chain A: L.49, D.51, G.53, S.54, V.88, P.89, Y.90, T.91, Q.92, F.127, I.129, W.134, I.137, I.145, R.147, Y.217, K.243, I.245, D.247, G.249, T.348, V.351 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.49, A:V.88, A:Y.90, A:F.127, A:I.137, A:I.145, A:Y.217, A:I.245, A:V.351 Hydrogen bonds: A:G.53, A:G.53, A:T.91, A:G.249 pi-Stacking: A:Y.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaller, M.R. et al., A Potent and Orally Efficacious, Hydroxyethylamine-Based Inhibitor of beta-Secretase. ACS Med Chem Lett (2012)

Release Date

2012-10-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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