SMTL ID : 4fri.1

Crystal structure of BACE1 in complex with biarylspiro aminooxazoline 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.64, T.122, E.123, S.124 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.126 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: Y.241 Ligand excluded by PLIP

1 x DWA: (4R)-4-[3-(2-fluoropyridin-3-yl)phenyl]-4-(4-methoxyphenyl)-4,5-dihydro-1,3-oxazol-2-amine(Non-covalent)

DWA.4: 16 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, S.54, N.56, V.88, Y.90, W.95, F.127, I.129, W.134, I.137, D.247, G.249 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.127, A:I.129, A:W.134, A:I.137 Hydrogen bonds: A:D.51 Water bridges: A:D.247 pi-Stacking: A:Y.90

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 5 residues within 4Å: Chain A: R.115, A.116, N.117, E.153, Q.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.117 Salt bridges: A:E.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Structure- and Property-Based Design of Aminooxazoline Xanthenes as Selective, Orally Efficacious, and CNS Penetrable BACE Inhibitors for the Treatment of Alzheimer's Disease. J.Med.Chem. (2012)

Release Date

2012-09-12

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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